BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.997e-25
Identity = 66/187 (35.29%), Postives = 105/187 (56.15%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AG ++IG+  KD V ++ +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KAT+ G   Q A + L++  K+D   T ++ V+ A+  L   +
Sbjct:   17 RLYQVEYAMEAIGNAG-SAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDD--VTREDAVKLALKALSKTM 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.915e-25
Identity = 63/187 (33.69%), Postives = 105/187 (56.15%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQV YA +AVK  G T++GV+ K+ V +  +K++  KL++ +S   +F I  ++    +G+ ADAR LV +AR EA  +R  YG  +P+ VL K I D  Q +TQ+  +RP G   ++  ++++  P L++ DP+G +F  +A + G     A+   E    +D     +  ++ AI  L   L+
Sbjct:   22 RLFQVNYAREAVKR-GATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNDK--PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDD--LDMEGAIKLAILALAKTLE 203          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.915e-25
Identity = 64/186 (34.41%), Postives = 102/186 (54.84%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T++GV+ K  V ++ +K+   +LLD   +  +F +  ++G    G+ +D R L+  AR +A + R  Y   + ++ L K I+D  Q YTQH  +RP GV  +V  ID+   P+L   +P+G F  + A + G     A  +LEK  K D     Q T+  A+  L + L+
Sbjct:   23 LYQVDYAFEAVKR-GWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKED--LDIQSTILLALRALMATLK 205          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.113e-25
Identity = 69/187 (36.90%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ ADAR LV +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D   G P L++ DP+G F   KA + G        FLEK  K       QETV+ AI  L  V++
Sbjct:   17 LFQVEYAMEAVRK-GNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNYKETSG---QETVKLAIRALLEVVE 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.677e-25
Identity = 65/187 (34.76%), Postives = 105/187 (56.15%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTH-LFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AG T +G+   + + V  ++K   KLLD + +T  ++ ++  +     G+TADA  L+   R+ AA +R  YG EMPV+ L + + ++ Q YTQ    RP GV  + +  D+  G +L++ DP+G++ G KAT  G   Q A+  L+++ K+      +E  Q AI  L   L
Sbjct:   17 RLYQVEYAMEAISHAG-TCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP---NLEEAKQLAIKVLWKTL 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.677e-25
Identity = 66/187 (35.29%), Postives = 104/187 (55.61%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AG ++IG+  KD V ++ +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KA + G   Q A + L++  K+D   T +E V+ A+  L   +
Sbjct:   17 RLYQVEYAMEAIGNAG-SAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDA--TREEAVELALKVLTKTM 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.721e-25
Identity = 63/186 (33.87%), Postives = 102/186 (54.84%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T++GV+ K  V ++ +K+   +LLD  S+  +F +  ++G    G+ +D R L+  AR +A + R  Y   + +D L K ++D  Q+YTQH  +RP GV  ++  ID    P+L   +P+G F  + A + G     A  + EK  + D     Q+T+   I  L S L+
Sbjct:   23 LYQVDYAFEAVKK-GWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYRED--LNMQDTILLGIRALASTLK 205          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.721e-25
Identity = 67/186 (36.02%), Postives = 101/186 (54.30%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   +D   T   T++  I  L  V+Q
Sbjct:   16 LFQVEYAQEAVKK-GSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.721e-25
Identity = 72/194 (37.11%), Postives = 112/194 (57.73%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY-----TQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF--FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +A+K  G T IG++ K+ V +  +K++   L+  +S+  +  I  ++G   +G+TADARTL+  AR EA   RF Y   + V+V+A+ I+D S  +      +    RP GV  ++  +D E GPRLF+ DP+G F  F  KAT AG +  ++I       K + + T +E    A+STL+ V++
Sbjct:   20 RLFQVEYATEAMKL-GSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVD-ETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSI----LHEKYNKSMTLREAEILALSTLKQVME 207          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.721e-25
Identity = 64/183 (34.97%), Postives = 106/183 (57.92%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+E+A  AV  +G TS+G++  + V + T+KK+P  L+D TSV  +  +T  +G++ +GM  D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  ++   D+  GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+
Sbjct:   18 KLVQIEHALTAV-GSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLK 196          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA4_SPIOL2.997e-2535.29Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSMA_THEON3.915e-2533.69Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_SULAC3.915e-2534.41Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSA7_SOLLC5.113e-2536.90Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA4_CAEEL6.677e-2534.76Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA4_ARATH6.677e-2535.29Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSMA_SULTO8.721e-2533.87Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSA7_MOUSE8.721e-2536.02Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA5_ENTHI8.721e-2537.11Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA2_ORYSJ8.721e-2534.97Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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