BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:216..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.721e-25
Identity = 64/183 (34.97%), Postives = 106/183 (57.92%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+E+A  AV  +G TS+G++  + V + T+KK+P  L+D TSV  +  +T  +G++ +GM  D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  ++   D+  GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+
Sbjct:   18 KLVQIEHALTAV-GSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.139e-24
Identity = 62/187 (33.16%), Postives = 104/187 (55.61%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RL+QVEYA +AVK  G T++G++  D V ++  K+V  KLL+ +S+  +F I +++G+ ++G+  DAR LV +AR E    R  Y   + V+ LAK + D  Q  TQ+  +RP G   ++  + +    RLF+ DP+G    +KAT  G+    A+   E++   D A   ++ +   +  L S  +
Sbjct:   21 RLYQVEYAREAVKR-GTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDG-ESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLA--LKDAILLGLKALHSATE 203          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.139e-24
Identity = 68/183 (37.16%), Postives = 101/183 (55.19%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+EYA  AV AAG  S+G++  + V + T+KK    L D  S   + PITK++G++ +GM  D R LV++AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   DE   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+
Sbjct:   18 KLVQIEYALAAV-AAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.488e-24
Identity = 63/186 (33.87%), Postives = 104/186 (55.91%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++G+RGKD V +  +KK   KL +  +V  +  + +++ +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   +  + ++ AI  L  V+Q
Sbjct:   18 LFQVEYAQEAVKK-GSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQ 202          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.488e-24
Identity = 64/183 (34.97%), Postives = 106/183 (57.92%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+E+A  AV  +G TS+G++  + V + T+KK+P  L+D  SV  +  +T  +G++ +GM  D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  +V   D++ GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+
Sbjct:   18 KLVQIEHALTAV-GSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.943e-24
Identity = 64/188 (34.04%), Postives = 106/188 (56.38%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSI-DEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +AVK  G TSIG++  + + +   K+    L++ TS+  +F I +++G   +G+ ADAR LV++AR EA   +  Y   + VD L+K + D  Q+YTQ+  +RP G   ++  + D  C  +LF+ DP+G    +KAT+ G     A++  E + K+D      E +  A++ +    +
Sbjct:   21 RLFQVEYAREAVKR-GTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGIC--KLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDD--MNLNEAINLALTAINEATE 203          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.537e-24
Identity = 68/187 (36.36%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D   G P L++ DP+G F   KA + G        FLEK  K       QETV+ AI  L  V++
Sbjct:   17 LFQVEYALEAVRK-GNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFKETSG---QETVKLAIRALLEVVE 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.537e-24
Identity = 66/186 (35.48%), Postives = 101/186 (54.30%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   T   T++  I  L  V+Q
Sbjct:   16 LFQVEYAQEAVKK-GSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.537e-24
Identity = 63/186 (33.87%), Postives = 102/186 (54.84%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++G+RG + V +  +KK   KL D  +V  +  +  ++ +   G+TADAR ++ +AR E    +      + V+ + ++IA   Q YTQ    RP G+ A+++  D++  PRL++ DP+G +   KA + G   +    FLEK    D     +E ++ AI  L  V+Q
Sbjct:   18 LFQVEYAQEAVKK-GSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQ 202          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.537e-24
Identity = 63/186 (33.87%), Postives = 102/186 (54.84%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++G+RG + V +  +KK   KL D  +V  +  +  ++ +   G+TADAR ++ +AR E    +      + V+ + ++IA   Q YTQ    RP G+ A+++  D++  PRL++ DP+G +   KA + G   +    FLEK    D   +  E ++ AI  L  V+Q
Sbjct:   18 LFQVEYAQEAVKK-GSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQ 202          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA2_ORYSI8.721e-2534.97Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSMA_METB61.139e-2433.16Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA2_XENLA1.139e-2437.16Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA7_CARAU1.488e-2433.87Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSA2A_ARATH1.488e-2434.97Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSMA_METS31.943e-2434.04Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSA7_CICAR2.537e-2436.36Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7_BOVIN2.537e-2435.48Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA7L_MOUSE2.537e-2433.87Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7L_MACFA2.537e-2433.87Proteasome subunit alpha type-7-like OS=Macaca fas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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