BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:527..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.706e-49
Identity = 68/108 (62.96%), Postives = 84/108 (77.78%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++AGMEGT + DGK K L+AYHE GHA+  TL P H PVQKVTL+PR QA+GLTWF+  ++  L+SK QL + I+  LGGRAAEE +FG  EVTTGA+ DLQQ+T
Sbjct:  391 IDRVIAGMEGTPIMDGKIKRLIAYHETGHALTATLLPNHPPVQKVTLIPRRQAKGLTWFMQDNERDLLSKSQLMSMIMVALGGRAAEEAVFGNAEVTTGASNDLQQVT 498          

HSP 2 Score: 70.8626 bits (172), Expect = 1.706e-49
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            LA+QMVT FGMS +GP  L  G++   +   M     +SE++   IDA V+ + +  YE  L  ++ NR  +D+I+E L+EKET+ G EFR
Sbjct:  500 LARQMVTRFGMSSLGPLCLETGNEEIFLGRDMRLMPEVSEEVIAQIDAQVRGMIEACYEKVLELMQANRVVMDRIVEELMEKETLDGKEFR 590          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.420e-48
Identity = 74/112 (66.07%), Postives = 92/112 (82.14%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITWFGQ 337
            IDR+VAGMEGT + D KSK L+AYHEVGHA+ GTL PGHDPV+KVTL+PRGQA+GLTWF P +D +L+++ Q+ ARI G LGGR AEEVIFG  EVTTGA  D+++IT+  +
Sbjct:  448 IDRVVAGMEGTPLVDSKSKRLIAYHEVGHALIGTLCPGHDPVEKVTLIPRGQAQGLTWFTPDEDQSLMTRNQMIARIAGLLGGRVAEEVIFGDDEVTTGAGNDIEKITYLAR 559          

HSP 2 Score: 51.6026 bits (122), Expect = 1.420e-48
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQ 623
            LA+QMVT  GMS +G  +L +             R+  SE +A  ID  ++ +   A++ A   I  NR  +D +++ L+++ET+ G+ FR    S Q
Sbjct:  557 LARQMVTKLGMSSLGLVALEEEGDRNFSGGDWGKRSEYSEDIAARIDREIQAIVTAAHQRATRIIEENRNLMDLLVDALIDQETIEGEHFRQLVESYQ 654          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.183e-47
Identity = 63/112 (56.25%), Postives = 87/112 (77.68%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITWFGQ 337
            ID+I+AG+EG+ + D + K L+AYHE GHA+  T  P HDPVQKVTL+PR QA+GLTWF+P+DD  L+SK Q+ ++I+  L GRA EE++FG PEVT GAA D++Q+T+  +
Sbjct:  408 IDKIIAGLEGSPLADSRIKRLIAYHEAGHAVAATFLPHHDPVQKVTLIPRRQAKGLTWFLPNDDQFLVSKSQILSKIIAALAGRAMEEIVFGLPEVTIGAANDIKQVTFMAR 519          

HSP 2 Score: 63.929 bits (154), Expect = 1.183e-47
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEF 599
            +A+QMVT FGMS++GP  L + S    +   +M R+ +SE++   +D  V+ +    Y  A + +  NR+ ID+++  L+EKET+   EF
Sbjct:  517 MARQMVTKFGMSKVGPICLENSSSEVFIGRDLMGRHELSEEMVAKVDLEVRSILKDCYIQARTILSQNRKLIDRVVNELVEKETIEAKEF 606          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.991e-32
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 2
Query:    2 IDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            I+R+VAG+E    V++D K K +VAYHEVGHA+ G + PG   V K+++VPRG A  G T  +P++D  L+++ +L  +I   LGGRAAEE++F    +TTGAA DLQ+ T
Sbjct:  413 IERVVAGLEKKSRVLSD-KEKKIVAYHEVGHALVGAVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRFLLNESELRDQIATLLGGRAAEEIVF--DSITTGAANDLQRAT 520          

HSP 2 Score: 62.7734 bits (151), Expect = 4.991e-32
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSEI-GPWSLMDGSQSGDVIMRM-MARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIPAEI 638
            R+  LA+QMVTT+GMS++ GP +   G Q+  +   M   R  +S+  A++ID  VK + ++ +  AL+ + +NR+ ++ I E +LEKE + G+E        Q P  +
Sbjct:  518 RATDLAEQMVTTYGMSKVLGPLAYDKGQQNNFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQGHNQALAILEHNRDLLEAIAEKILEKEVIEGEELHHLLGQVQAPGTL 626          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 3.164e-31
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 2
Query:    2 IDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++RI+AG E    V++D K K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LG R AEEVIFG   VTTGA+ D  Q++
Sbjct:  490 LERIIAGPEKKNAVVSDEKKK-LVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGERVAEEVIFGQDNVTTGASNDFMQVS 601          

HSP 2 Score: 53.1434 bits (126), Expect = 3.164e-31
Identity = 31/91 (34.07%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEF 599
            +A+QMV   G S+ IG  ++  G  +  +  +M  +   S   A+ +DA V+ L +RAYE A   I  + + + K+ ++L+EKET+ G+EF
Sbjct:  603 VARQMVERLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYERATEIITTHIDILHKLAQLLIEKETVDGEEF 693          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.365e-31
Identity = 54/112 (48.21%), Postives = 74/112 (66.07%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG   VTTGA+ D  Q++
Sbjct:  499 LERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVS 610          

HSP 2 Score: 50.8322 bits (120), Expect = 5.365e-31
Identity = 31/93 (33.33%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEF 599
            +A+QM+  FG S+ IG  ++  G   G+  M  +M ++   S   A+ +DA V+ L ++AY+ A   I  + + + K+ ++L+EKET+ G+EF
Sbjct:  612 VARQMIERFGFSKKIGQVAV--GGPGGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRATEIITTHIDILHKLAQLLIEKETVDGEEF 702          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.615e-30
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEV FG   VTTGA+ D  Q++
Sbjct:  490 LERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEV-FGQDNVTTGASNDFMQVS 600          

HSP 2 Score: 54.6842 bits (130), Expect = 2.615e-30
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEF 599
            +A+QMV  FG S+ IG  ++  G  +  +  +M ++   S   A+ +D  V+ L D+AYE A   I  + + + K+ ++L+EKET+ G+EF
Sbjct:  602 VARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYERATQIINTHIDILHKLAQLLIEKETVDGEEF 692          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.616e-30
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++RI+AG E    +   + + LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG   VTTGA+ D  Q++
Sbjct:  469 LERIIAGPEKKNAVVSEEKRRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVS 580          

HSP 2 Score: 50.0618 bits (118), Expect = 2.616e-30
Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEF 599
            +A+QMV  FG S+ IG  ++  G   G+  +  +M ++   S   A+ +DA V+ L ++AY  A   I  + + + K+ ++L+EKET+ G+EF
Sbjct:  582 VARQMVERFGFSKKIGQVAI--GGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVEKAYSRATQIITTHIDILHKLAQLLMEKETVDGEEF 672          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.434e-30
Identity = 54/112 (48.21%), Postives = 74/112 (66.07%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG   VTTGA+ D  Q++
Sbjct:  487 LERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVS 598          

HSP 2 Score: 47.7506 bits (112), Expect = 4.434e-30
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEF 599
            +A+QMV  FG S+ IG  ++     +  +   M ++   S   A+ +DA V+ L ++AY  A   I    + + K+ ++L+EKET+ G+EF
Sbjct:  600 VARQMVERFGFSKKIGQVAVGGAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKAYVRAKEIITTQIDILHKLAQLLIEKETVDGEEF 690          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.663e-29
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 2
Query:    2 IDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++AG  + + +   K K +VA+HE GH + G      D V KVT+VPRG A G    +P +D   +++ +L  +I+G LGGR AEEV FG  EV+TGA  D Q+ T
Sbjct:  403 IDRVIAGPAKKSRVISPKEKKIVAWHEAGHTVVGVKLENADMVHKVTIVPRGMAGGYAVMLPKEDRYFMTQPELLDKIIGLLGGRVAEEVTFG--EVSTGAHNDFQRAT 509          

HSP 2 Score: 59.6918 bits (143), Expect = 3.663e-29
Identity = 32/107 (29.91%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSM--SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIP 629
            R+ G+A++MVT +GMSE +GP   + GS  G V +    +N    S+ +A +ID  V+R+    Y      +  N++++D + + LL+ ET+  ++ ++  H  ++P
Sbjct:  507 RATGIARKMVTEYGMSEKLGPMQFISGS-GGQVFLGRDIQNEQNYSDAIAHEIDLEVQRIIKECYARCKQILLENKDSLDLVAKTLLDMETLDAEQIKSLVHEGKLP 612          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH_CYAME1.706e-4962.96Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH2_SYNY31.420e-4866.07Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH_CYACA1.183e-4756.25Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH3_SYNY34.991e-3248.65Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_TOBAC3.164e-3149.56Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ARATH5.365e-3148.21Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_MEDSA2.615e-3047.32Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ORYSJ2.616e-3047.32Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH5_ARATH4.434e-3048.21Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_BACPF3.663e-2944.04Cell division protease ftsH homolog OS=Bacillus ps... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
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