BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:527..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.664e-28
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 IDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++AG   +  V++  + K+ VAYHE GHA+ G    G + VQK+T++PRG A G     P ++    SK++L A I   +GGRAAE +I+G   ++TGA+ D+ + T
Sbjct:  449 IDRVMAGPAKKSRVISQEELKA-VAYHEAGHAVVGLKVKGGNKVQKITIIPRGNAGGYNLMTPEEEKYNASKKELLATIASYMGGRAAEMIIYGKENISTGASDDISRAT 557          

HSP 2 Score: 57.7658 bits (138), Expect = 6.664e-28
Identity = 30/105 (28.57%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  315 SRSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIP 629
            SR+  +A++MVT +GMS +GP    + +++   + R  ++ +   K+A +ID  ++++   + EIA+  I  N E ++ I + LLE ET+  +E      + ++P
Sbjct:  554 SRATKIARKMVTEWGMSALGPIKYEEDTEN-PFLGRDYSKGTFGSKMAHEIDLEIRKIISASEEIAIKAIEQNLELLELIKDSLLENETIVAEEIEYIEKNMKLP 657          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.673e-28
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 2
Query:    2 IDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++RI+AG E    V++D K K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG   VTTGA+ D  Q++
Sbjct:  467 LERIIAGPEKKNAVVSDEKKK-LVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEDNVTTGASNDFMQVS 578          

HSP 2 Score: 38.891 bits (89), Expect = 6.673e-28
Identity = 24/83 (28.92%), Postives = 46/83 (55.42%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEK 575
            +A+QMV   G S+ IG  ++  G  +  +  +M  +   S   A+ +D+ V+ L ++AYE A   I  + + + K+ ++L+EK
Sbjct:  580 VARQMVERLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDSEVRELVEKAYERAKQIITTHIDILHKLAQLLIEK 662          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.676e-28
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    5 DRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            DR++AG  + + +   K +++VAYHE GH + G +    D V KVT+VPRGQA G    +P +D    +K +L  +IVG LGGR AEE+IFG  EV+TGA  D Q+ T
Sbjct:  399 DRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQAGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFG--EVSTGAHNDFQRAT 504          

HSP 2 Score: 53.5286 bits (127), Expect = 6.676e-28
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSM--SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            R+  +A++MVT FGMSE +GP      SQ G V +     N    S+++A +ID  ++R+    YE A   +  NR+ ++ I + LL+ ET+  ++ +
Sbjct:  502 RATNIARRMVTEFGMSEKLGPLQFGQ-SQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYERAKQILTENRDKLELIAQTLLKVETLDAEQIK 598          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.295e-27
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    5 DRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITWFGQ 337
            DRIV G E  T+     SK L AYHE GHAI    T G  P+ K T++PRG A G+   +PS+D T +SK+QL AR+   +GGR AEE+IFG   +TTGA+ DL Q T   Q
Sbjct:  596 DRIVMGTERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHPIHKATIMPRGSALGMVTQLPSNDETSVSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQ 707          

HSP 2 Score: 36.965 bits (84), Expect = 9.295e-27
Identity = 29/97 (29.90%), Postives = 49/97 (50.52%), Query Frame = 3
Query:  315 SRSLGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            S++  LA+ MV++ GMSE IGP  + +   S      M +R          IDA V +L   AYE   S ++ + + +  +   LLE ET++ ++ +
Sbjct:  700 SQATELAQYMVSSCGMSEAIGPVHIKERPSSD-----MQSR----------IDAEVVKLLREAYERVKSLLKRHEKQLHTLANALLEYETLTAEDIK 781          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.214e-26
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            +DRI  G+E   MT   K K  +A HE GHA+ G ++   D V K++++PRG A G+T  +P +D  +  K+ L+ +I+  LGGRAAEEV FG   +TTGA  DLQ+ T
Sbjct:  393 LDRITMGLERKGMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRAT 501          

HSP 2 Score: 45.4394 bits (106), Expect = 1.214e-26
Identity = 30/95 (31.58%), Postives = 52/95 (54.74%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEF 599
            R+  LA +MV+ +GMS+ +GP ++     +   +  M      S  L  +ID  VKR+    YE A + +   +E +  +++ LLEKET++ +EF
Sbjct:  499 RATDLAYRMVSMWGMSDKVGPIAIR--RVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEF 591          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.067e-26
Identity = 66/127 (51.97%), Postives = 86/127 (67.72%), Query Frame = 2
Query:    2 IDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDD---PTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQ--------ITWFGQTD 343
            IDR++AG E    VM++ K K+LVAYHE GHA+ G L P +DPVQK++++PRG+A GLTWF PS+D     L S+  L  ++   LGGR AEE+IFG  EVTTGA+ DLQQ        +T FG +D
Sbjct:  398 IDRVLAGPEKKNRVMSE-KRKTLVAYHEAGHALVGALMPDYDPVQKISIIPRGRAGGLTWFTPSEDRMESGLYSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSD 523          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.679e-26
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+++ G E    VM+D + +S  AYHE GH I G L P HDP  KVT++PRG+A G+T+F+P  D   IS+Q+L ++I    GGR AEE+I+G   V+TGA  D++  T
Sbjct:  390 DKMMMGSERRSMVMSDFQKES-TAYHEAGHVIIGRLVPDHDPAHKVTIIPRGRALGVTFFLPESDTLSISRQKLESQISTLYGGRLAEEIIYGAKNVSTGAYNDIKIAT 497          

HSP 2 Score: 40.0466 bits (92), Expect = 2.679e-26
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMAR-NSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETM 584
            LAK MVT +G SE +GP  L+   + G++ + R +A+   MS++ A  ID  VK L +  Y  A + +  N + +  + E L++ ET+
Sbjct:  499 LAKNMVTQWGFSEKLGP--LLYAEEEGEIFLGRSVAKAKHMSDETARIIDEEVKLLIEINYSRARNILNENIDILHAMKEALIKYETI 584          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.895e-26
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    2 IDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++AG   +  V++D + + LVAYHE GHA+ G     +D VQK+T++PRGQA G T   P S D  L  K  L A I   +GGRAAEE I+G  E+TTGA+ D  + T
Sbjct:  468 IDRVIAGPAKKSRVISD-EDRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKAT 577          

HSP 2 Score: 43.8986 bits (102), Expect = 5.895e-26
Identity = 27/107 (25.23%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIPAEI 638
            ++  +A+ MVT  GMS++G    +    +    +++      SE+ A+DID  +  + +  Y+ A + I++NR+ ++ ++E LL  ET+   +      + ++P EI
Sbjct:  575 KATNIARAMVTQLGMSKLGQVQYVPSQGTLPSNVKLY-----SEQTAKDIDNEINFIIEEQYKKAKTIIKSNRKELELLVEALLIAETILKSDIDFIHKNTKLPPEI 676          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.299e-25
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 2
Query:    2 IDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++AG   +  V++D   K LVAYHE GHA+ G     +D VQK+T++PRGQA G T   P S D  L  K  L A I   +GGRAAEE I+G  E+TTGA+ D  + T
Sbjct:  465 IDRVIAGPAKKSRVVSDADRK-LVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGPLEITTGASSDFYKAT 574          

HSP 2 Score: 43.5134 bits (101), Expect = 1.299e-25
Identity = 27/107 (25.23%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIPAEI 638
            ++  +A+ MVT  GMS++G    +    +     ++      SE+ A+DID  +  + +  Y+ A + I+ NR+ ++ ++E LL  ET+   +        ++P EI
Sbjct:  572 KATNIARAMVTQLGMSKLGQVQYVPSQGTVPPGTKLF-----SEQTAKDIDFEINAIIEEQYKKARTIIKTNRKELELLVEALLIAETILKSDIDYIHEHTKLPPEI 673          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.734e-25
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 DRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT+GA+ D++  T
Sbjct:  393 DKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGAT 500          

HSP 2 Score: 53.5286 bits (127), Expect = 3.734e-25
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+ MVT  G+S+ IGP  +  GS S D+  R  + N +SE  AE IDA VKR+  + YE A   +  + + +  +   L+E ET+SG + +
Sbjct:  502 IARAMVTKAGLSDLIGP--IFHGSNSDDMYGRQSS-NEISEATAELIDAEVKRIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIK 590          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH_MYCPU6.664e-2840.91Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_CAPAN6.673e-2850.44Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_BACSU6.676e-2846.30Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSHB_ARATH9.295e-2750.00Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH_AQUAE1.214e-2644.95Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH4_SYNY32.067e-2651.97Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH_BUCAI2.679e-2646.79Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_MYCGE5.895e-2647.75Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_MYCPN1.299e-2548.65Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_RICPR3.734e-2537.04Cell division protease ftsH homolog OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
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