BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:527..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.231e-25
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 DRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT+GAA D++  T
Sbjct:  393 DKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGKNKVTSGAASDIKGAT 500          

HSP 2 Score: 51.2174 bits (121), Expect = 8.231e-25
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+ MVT  G+S+ IGP  +  GS S D+  R  + N +SE  A+ IDA VK++  + YE A   +  + + +  +   L+E ET+SG + +
Sbjct:  502 IARAMVTKAGLSDLIGP--IFHGSSSDDMYGRQQS-NEISEATAKLIDAEVKKIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIK 590          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.071e-24
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 DRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT+GA+ D++  T
Sbjct:  393 DKVLMGVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGAT 500          

HSP 2 Score: 51.9878 bits (123), Expect = 1.071e-24
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+ MVT  G+S+ IGP  +  GS SGD +      N  SE  AE IDA VKR+  + YE A   +  + + +  +   L+E ET+SG + +
Sbjct:  502 IARAMVTKAGLSDLIGP--IFHGS-SGDDMYGRQPNNETSEATAELIDAEVKRIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIK 590          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.360e-24
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 DRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            DR++AG      T   K + LVAYHE GH I G +      V KVT+VPRG+A G    +P +D  L+SK+ +  ++ G +GGR AEE+IF     TTGA+ D +Q T
Sbjct:  425 DRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFN--VQTTGASNDFEQAT 530          

HSP 2 Score: 47.7506 bits (112), Expect = 2.360e-24
Identity = 33/104 (31.73%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIPAEI 638
            +A+ MVT +GMSE +GP    +G+ +  ++     + S+SE+ A +ID  V+ L + A   A   I++NRE    I E LL+ ET+   + +A   + ++P  +
Sbjct:  532 MARAMVTEYGMSEKLGPVQY-EGNHA--MLGAQSPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSTQIKALYETGKMPEAV 632          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.360e-24
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 DRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            DR++AG      T   K + LVAYHE GH I G +      V KVT+VPRG+A G    +P +D  L+SK+ +  ++ G +GGR AEE+IF     TTGA+ D +Q T
Sbjct:  425 DRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFN--VQTTGASNDFEQAT 530          

HSP 2 Score: 47.7506 bits (112), Expect = 2.360e-24
Identity = 33/104 (31.73%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIPAEI 638
            +A+ MVT +GMSE +GP    +G+ +  ++     + S+SE+ A +ID  V+ L + A   A   I++NRE    I E LL+ ET+   + +A   + ++P  +
Sbjct:  532 MARAMVTEYGMSEKLGPVQY-EGNHA--MLGAQSPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSTQIKALYETGKMPEAV 632          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.072e-24
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 DRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT+GA+ D++  T
Sbjct:  393 DKVLMGVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPLHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGAT 500          

HSP 2 Score: 51.2174 bits (121), Expect = 3.072e-24
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+ MVT  G+S+ IGP  +  GS S D+  R  + N  SE  AE IDA VK++  + YE A   +  + + +  +   L+E ET+SG + +
Sbjct:  502 IARAMVTKAGLSDLIGP--IFHGSSSDDMYGRQPS-NETSEATAELIDAEVKKIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIK 590          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 6.756e-24
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            DRI+ G E    V++D +S+ L A+HE GHA+    T G  PV K T+VPRG A G+   +P  D T IS++Q+ AR+   +GGR AEE+IFG  EVT+GA+ DL+Q T
Sbjct:  462 DRIMMGSERKSAVISD-ESRKLTAFHEGGHALVAIHTEGALPVHKATIVPRGMALGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQAT 569          

HSP 2 Score: 35.039 bits (79), Expect = 6.756e-24
Identity = 26/91 (28.57%), Postives = 45/91 (49.45%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            LA+ MVT FGMS+       +   +G          SMS +    I++ VK+L ++AY  A + +    + +  +   LL+ ET+SG + +
Sbjct:  571 LARAMVTKFGMSKEVGLVAHNYDDNG---------KSMSTETRLLIESEVKQLLEKAYNNAKTILTVYNKELHALANALLQHETLSGKQIK 652          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.493e-23
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 2
Query:   50 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            + + ++AYHE GHA+ GT T G D V K+T++PRG  A G T+ IP DD  ++++QQL A +   L GRAAE V FG  EV+TGA  D+ + T
Sbjct:  394 EERRIIAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDRHIVTEQQLLAEVDVLLSGRAAEFVAFG--EVSTGAGNDISRAT 484          

HSP 2 Score: 41.9726 bits (97), Expect = 1.493e-23
Identity = 27/95 (28.42%), Postives = 48/95 (50.53%), Query Frame = 3
Query:  315 SRSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEF 599
            SR+  + ++M+T +GMSE      +    +G +    +AR   SE   + +D  V R+    Y   ++ +   +E ++ I   LLE+ET+  DEF
Sbjct:  481 SRATDIVRKMITDYGMSEKFQNVALTRRGTGYLAEPQLARE-YSECTQQYVDEEVARVLAERYRAVVALLTEKKELLEYIATRLLERETIERDEF 574          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.267e-23
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            DRI+ G E    V++D +S+ L AYHE GHA+    T G  PV K T+VPRG A G+   +P  D T +S++Q+ AR+   +GGR AEE+IFG  EVT+GA+ D QQ T
Sbjct:  465 DRIMMGSERKSAVISD-ESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQAT 572          

HSP 2 Score: 30.0314 bits (66), Expect = 4.267e-23
Identity = 23/95 (24.21%), Postives = 44/95 (46.32%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            ++  +A+ MVT +GMS+   +   +    G          SMS +    I+  VK   + AY  A + +  + + +  +   LLE ET++G + +
Sbjct:  570 QATAVARAMVTKYGMSKQLGFVSYNYEDDG---------KSMSTETRLLIEKEVKCFVENAYNNAKNILIKHNKELHALANALLEHETLTGAQIK 655          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.384e-23
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 2
Query:   62 LVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITWFGQ 337
            L AYHE GHAI    T G  P+ K T++PRG A G+   +PS D T ISK+QL AR+   +GGR AEE+IFG   VTTGA  DL   T   Q
Sbjct:  597 LTAYHESGHAIVALNTQGAHPIHKATILPRGSALGMVTQLPSQDETSISKKQLLARLDVCMGGRVAEELIFGEDNVTTGARNDLHTATELAQ 688          

HSP 2 Score: 35.4242 bits (80), Expect = 9.384e-23
Identity = 27/99 (27.27%), Postives = 44/99 (44.44%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQ 623
            LA+ MV+  GMS+ IGP               +  +   S ++   IDA V +L   AY      ++ + + +  +   LLE+ET++ DE     H  Q
Sbjct:  686 LAQYMVSNCGMSDAIGP---------------VHVKERPSVEMQSRIDAEVVKLLREAYGRVKRLLKKHEKQLHALANALLERETLTADEINKVVHPYQ 769          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.419e-23
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAEEV     E++TGA+ DL++ T
Sbjct:  409 VERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEEVFL--EEISTGASNDLERAT 516          

HSP 2 Score: 47.7506 bits (112), Expect = 9.419e-23
Identity = 25/95 (26.32%), Postives = 52/95 (54.74%), Query Frame = 3
Query:  318 RSLGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            R+  + K MV+ +GMS +    +++  ++  +     +    SEK AE++D  +K L +  Y+     + + REAI+ +++ L +KE ++G+  R
Sbjct:  514 RATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYQHVKQTLSDYREAIEIMVKELFDKEVITGERVR 608          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH_RICTY8.231e-2537.96Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICCN1.071e-2437.04Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_STRR62.360e-2443.52Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN2.360e-2443.52Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_RICFE3.072e-2437.04Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH4_ARATH6.756e-2448.62Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH_TREPA1.493e-2348.39Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH5_ORYSJ4.267e-2348.62Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH9_ORYSJ9.384e-2352.17Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH_HELPJ9.419e-2342.73Cell division protease ftsH homolog OS=Helicobacte... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
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