BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:527..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.104e-17
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 2
Query:    5 DRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITWFGQ 337
            DR++ G       D ++  + A+HE GHA+   LT    P+ KVT++PRG+A GLT F+   D + +++ QL A++   +GGR  EE++FG  +VT GAA D ++ T   Q
Sbjct:  402 DRLIMGPAKRRPLDDQTNRVSAFHEAGHALVALLTADSIPLHKVTIIPRGEAGGLTSFLQEKDISFMTRAQLLAQLDVLMGGRVGEELVFGADKVTNGAADDFRKATILAQ 512          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.299e-16
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 IDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++R++AG  + + +   + + +VA+HE GHA+ G L    + V KV++ PR   A G +  +P D   L +K+QLF R+   LGGRAAE + F    VT+GA  DL+++T
Sbjct:  549 VERVIAGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFS--RVTSGAQDDLRKVT 655          

HSP 2 Score: 35.8094 bits (81), Expect = 2.299e-16
Identity = 25/93 (26.88%), Postives = 44/93 (47.31%), Query Frame = 3
Query:  330 LAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA 605
            +A  MV  FGM+  IGP S  +  +     +  + R   S+ L + +D   K L  +AY      + +N + +  +   LLEKE ++ ++  A
Sbjct:  657 IAYSMVKQFGMAPSIGPVSFPEAQEG----LMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEA 745          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.305e-16
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    2 IDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            +DR +AG  +   +   + + +VAYHE GHAI G +      V+KVT+VPRG+  G    +P ++    +   L  ++   +GGR  EE++FG    T GA+ D+++ T
Sbjct:  431 MDRAMAGPAKKDRIQSMREREIVAYHEAGHAIVGLVLENGSTVRKVTVVPRGRIGGYMLALPDEEIMQPTNFHLQDQLASLMGGRLGEEIVFG--VATPGASNDIEKAT 537          

HSP 2 Score: 40.4318 bits (93), Expect = 2.305e-16
Identity = 29/102 (28.43%), Postives = 47/102 (46.08%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRASSHSCQIPAE 635
            +A+ MVT +GMS+       +G     +        + SE  A  ID  V+R+   AY+ A   I  +RE    I E LL+ ET+   +  +   + ++P E
Sbjct:  539 IARSMVTEYGMSKKLGMVSYEGDHQVFIGRDYGQTKTYSEATAVMIDDEVRRILGEAYDRAKEAIETHREQHKAIAEALLKYETLDAKQIMSLFKTGKMPDE 640          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    5 DRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            D+++ G+E    +M+D + K L AYHE GHA+ G      DP+ K T++PRG+A G+   +P +D   + + ++ A I   + GR AEE+IFG  +VT+GA+ D++  T
Sbjct:  393 DKVMMGVERRSMIMSD-EQKKLTAYHEGGHALVGLYCLASDPIHKATIIPRGRALGMVMRLPENDRFSMPRDKMEADIAVAMAGRVAEEIIFGKEKVTSGASSDIKMAT 500          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 44/109 (40.37%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            I+R++ G+E  T +     K+ VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QLF R+   LGGR AE++ FG  ++TTGA  DL+++T
Sbjct:  541 IERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQYLPREQ-FLYTREQLFDRMCMMLGGRVAEQLFFG--QITTGAQDDLRKVT 646          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.321e-16
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            I+R++AG+E  T +   + K  VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P D   LIS++Q   R++  LGGR +EE+ F  P VT+GA  D +++T
Sbjct:  533 IERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQ-YLISEEQFRHRMIMALGGRVSEELHF--PSVTSGAHDDFKKVT 639          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.321e-16
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG   +TTGA  DL+++T
Sbjct:  548 IERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVT 653          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 8.519e-16
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 IDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++R++AG  + + +   + + +VA+HE GHA+ G +    + V KV++ PR   A G    +P D   L +K+QLF R+   LGGRA+E + F   EVT+GA  DL+++T
Sbjct:  549 VERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQ-HLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDDLRKVT 655          

HSP 2 Score: 35.4242 bits (80), Expect = 8.519e-16
Identity = 24/93 (25.81%), Postives = 45/93 (48.39%), Query Frame = 3
Query:  330 LAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA 605
            +A  MV  FGM+  IGP S  +  +     +  + R   S+ L + +D   + L  +AY      +++N + +  +   LLEKE ++ ++  A
Sbjct:  657 IAYSMVKQFGMAPGIGPISFPEAQEG----LMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEA 745          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.257e-15
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            I+R++ G+E  + +   + K +VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P  D  L+++QQL  R+   LGGR +EE+ F  P VT+GA+ D +++T
Sbjct:  588 IERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPG-DIFLLTEQQLKDRMTMSLGGRVSEELHF--PSVTSGASDDFKKVT 694          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.161e-15
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   11 IVAGMEGTV----MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            +  G  GT     +   + + +VA+HE GHA+ G L    + V KV++ PR   A G +  +P D   L +K+QLF R+   LGGRAAE + F    VT+GA  DL+++T
Sbjct:  512 LTPGFSGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFS--RVTSGAQDDLRKVT 618          

HSP 2 Score: 35.039 bits (79), Expect = 3.161e-15
Identity = 25/93 (26.88%), Postives = 44/93 (47.31%), Query Frame = 3
Query:  330 LAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA 605
            +A  MV  FGM+  IGP S  +  +     +  + R   S+ L + +D   + L  RAY      + +N + +  +   LLEKE ++ ++  A
Sbjct:  620 IAYSMVKQFGMAPSIGPVSFPEAQEG----LVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEA 708          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YME1_SCHMA5.104e-1738.74Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
SPG7_MOUSE2.299e-1638.18Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
FTSH_LACLA2.305e-1633.94Cell division protease ftsH homolog OS=Lactococcus... [more]
FTSH_RICBR2.533e-1638.53Cell division protease ftsH homolog OS=Rickettsia ... [more]
AFG31_MOUSE3.308e-1640.37AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
AFG3_YEAST4.321e-1643.64Mitochondrial respiratory chain complexes assembly... [more]
AFG32_MOUSE4.321e-1640.37AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
SPG7_HUMAN8.519e-1637.27Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
RCA1_YEAST1.257e-1541.82Mitochondrial respiratory chain complexes assembly... [more]
SPG7_RAT3.161e-1538.18Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
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