BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:527..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    2 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            ++R +AG+E  T    G  K++VA HE GHA+ GT    L  G   V+K++++PR G A G T+  P+ +D  L+   +L  R+V  LGGRAAEEV++ G  ++TGA  D+++ T
Sbjct:  569 VERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSG-RISTGALDDIRRAT 682          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 40/122 (32.79%), Postives = 67/122 (54.92%), Query Frame = 2
Query:    5 DRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDL--------QQITWFGQTD 343
            DRI+ G E  +     ++K + AYHE GHA+    T       K T++PRG + G+T  +P  D    ++++  A +   +GGRAAEE+++G  ++T+GA  D+        + +T FG +D
Sbjct:  506 DRILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLGMTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSD 627          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH9_ARATH1.537e-1340.87Cell division protease ftsH homolog 9, chloroplast... [more]
YME1_SCHPO6.457e-1232.79Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
back to top