BQ623312

Overview
NameBQ623312
Unique NameBQ623312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:800..1425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.369e-72
Identity = 129/208 (62.02%), Postives = 157/208 (75.48%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQFQ 625
            +P DG++   T HEP+GV GQI+PWNFP+L+  WK+ PALA GN +V+K AEQTPLTALY+A L  EAG PPGV+N+V G+GPTAGAA+ASH DVDK++FTG  + G ++Q  A  SNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E VYDEFVE++ ARA  R+            PQ+D  QF+
Sbjct:  144 IPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDVYDEFVERSVARAKSRVVGNPFDSRTEQGPQVDETQFK 351
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 2.369e-72
Identity = 129/208 (62.02%), Postives = 157/208 (75.48%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQFQ 625
            +P DG+Y   T HEP+GV GQI+PWNFP+L+  WK+ PALA GN +V+K AEQTPLTALY+A L  EAG PPGV+NV+ G+GPTAGAA+ASH DVDK++FTG  + G ++Q  A KSNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E +Y EFVE++ ARA  R+            PQ+D  QF+
Sbjct:  164 IPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNVIPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYAEFVERSVARAKSRVVGNPFDSRTEQGPQVDETQFK 371
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 2.369e-72
Identity = 125/207 (60.39%), Postives = 158/207 (76.33%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQF 622
            +P DG+Y   T HEPIGV GQI+PWNFP+L+F WK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ GYGPTAGAA+ASH+ +DK++FTG  + GK++QE A +SNLK VTLELGGKSP IIF DAD+D AVE AH  +F+NQGQCC AGSR +V E +Y+EFV ++  RA RR+            PQID +Q+
Sbjct:  162 IPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQY 368
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 9.002e-72
Identity = 128/208 (61.54%), Postives = 156/208 (75.00%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQFQ 625
            +P DG++   T HEP+GV GQI+PWNFP+L+  WK+ PALA GN +V+K AEQTPLTALY+A L  EAG PPGV+N+V G+GPTAGAA+ASH  VDK++FTG  + G ++Q  A  SNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E VYDEFVE++ ARA  R+            PQ+D  QF+
Sbjct:  163 IPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEGVDKVAFTGSTEVGHLIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQENVYDEFVERSVARAKSRVVGNPFDSRTEQGPQVDETQFK 370
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 269.626 bits (688), Expect = 9.002e-72
Identity = 124/207 (59.90%), Postives = 157/207 (75.85%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQF 622
            +P DGN+   T HEPIGV GQI+PWNFP+++  WK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAGAA++SHMD+DK++FTG  + GK+++E A KSNLK VTLELGGKSP I+  DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++  RA + I    L       PQID EQ+
Sbjct:  145 IPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGATQGPQIDKEQY 351
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.005e-71
Identity = 124/207 (59.90%), Postives = 157/207 (75.85%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQF 622
            +P DGN+   T HEPIGV GQI+PWNFP+++  WK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAGAA++SHMD+DK++FTG  + GK+++E A KSNLK VTLELGGKSP I+  DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++  RA + I    L       PQID EQ+
Sbjct:  145 IPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQY 351
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 2.619e-71
Identity = 123/208 (59.13%), Postives = 158/208 (75.96%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQFQ 625
            +P DGN+   T  EP+GV GQI+PWNFP+L+F WK+ PAL+CGNT+V+K AEQTPLTAL++  L  EAG PPGV+N+V GYGPTAGAA++SHMDVDK++FTG  + GK+++E A KSNLK V+LELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++  RA + +    L       PQID EQ++
Sbjct:  145 IPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYE 352
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 2.619e-71
Identity = 127/206 (61.65%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQ 619
            +P DG+    T  EPIGV GQI+PWNFP+L+F WK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAGAA++SHMDVDK++FTG    GK+++E A KSNLK VTLELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E VYDEFV K+  RA + +    L +     PQID EQ
Sbjct:  145 IPSDGDIFTFTRREPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVRKSVERAKKYVLGNPLTQGINQGPQIDKEQ 350
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 2.619e-71
Identity = 123/208 (59.13%), Postives = 158/208 (75.96%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQFQ 625
            +P DGN+   T  EP+GV GQI+PWNFP+L+F WK+ PAL+CGNT+V+K AEQTPLTAL++  L  EAG PPGV+N+V GYGPTAGAA++SHMDVDK++FTG  + GK+++E A KSNLK V+LELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++  RA + +    L       PQID EQ++
Sbjct:  145 IPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYE 352
[Close]
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.421e-71
Identity = 124/207 (59.90%), Postives = 156/207 (75.36%), Query Frame = 2 
Query:    2 VPGDGNYHIQTLHEPIGVAGQIVPWNFPVLLFTWKVAPALACGNTIVLKSAEQTPLTALYLAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIGWRSLQEWG*TSPQIDPEQF 622
            +P DG+Y   T HEPIGV GQI+PWNFP+L+F WK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ G+GP  GAA+ASH+ +DK++FTG  + GK++QE A +SNLK VTLELGGKSP IIF DAD+D AVE AH  +F+NQGQCC AGSR YV E +Y+EFV K+  RA R+I            PQID +Q+
Sbjct:  162 IPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGFGPIVGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIYVEESIYEEFVRKSVKRAKRKIVGSPFDPTTEQGPQIDKKQY 368
The following BLAST results are available for this feature:
BLAST of BQ623312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ALDH2_MESAU2.369e-7262.02Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_BOVIN2.369e-7262.02Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
AL1A2_HUMAN2.369e-7260.39Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
ALDH2_MOUSE9.002e-7261.54Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
AL1A1_MACFA9.002e-7259.90Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_HUMAN2.005e-7159.90Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_SHEEP2.619e-7159.13Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_RAT2.619e-7161.65Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_BOVIN2.619e-7159.13Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A2_TAEGU3.421e-7159.90Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00403 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00403 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623312 ID=BQ623312; Name=BQ623312; organism=Citrus sinensis; type=EST; length=627bp
TGTCCCTGGTGATGGAAATTACCATATTCAAACTTTACATGAACCAATTG
GCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTGTTCTCTTGTTTACT
TGGAAAGTAGCGCCTGCACTAGCTTGTGGTAATACTATTGTTCTAAAGTC
TGCTGAGCAAACGCCTTTGACTGCTCTGTATTTGGCAAAGCTATTCCATG
AGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCA
ACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTT
TACAGGACACTGTGATACTGGTAAGATTGTTCAGGAATTGGCTGCAAAAA
GCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATA
ATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGC
TTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATG
TACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCT
ATGAGGCGTATTGGTTGGCGATCCCTTCAAGAATGGGGGTGAACAAGTCC
TCAAATTGATCCAGAGCAATTTCAAAA
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