BQ623318

Overview
NameBQ623318
Unique NameBQ623318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length266
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:734..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.564e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.564e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  213 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.564e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  194 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.564e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.564e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   73 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.564e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.961e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  215 IKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.961e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            +KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  218 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.785e-24
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  213 IKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.785e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
The following BLAST results are available for this feature:
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB24_PETSP4.564e-2498.08Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_HORVU4.564e-2498.08Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN4.564e-2498.08Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_SINAL4.564e-2498.08Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA4.564e-2498.08Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PETSP4.564e-2498.08Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL5.961e-2496.15Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_PEA5.961e-2496.15Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB48_MAIZE7.785e-2496.15Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2F_SOLLC7.785e-2496.15Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00409 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00409 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623318 ID=BQ623318; Name=BQ623318; organism=Citrus sinensis; type=EST; length=266bp
ATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCA
GGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGG
CTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCC
GGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGA
TATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGA
TTATTTATAAAATGCT
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