BQ623318

Overview
NameBQ623318
Unique NameBQ623318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length266
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:734..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.272e-22
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  214 IKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.272e-22
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            +KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  212 LKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.272e-22
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            +KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  212 LKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.287e-22
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  214 IKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            +KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.056e-21
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            +KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  214 LKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.222e-20
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 153
            IKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  214 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.519e-19
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 153
            IKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.592e-19
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 153
            IKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.138e-17
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 150
            IKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  205 IKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB24_SOLLC4.272e-2290.38Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_ORYSJ4.272e-2290.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.272e-2290.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP7.287e-2290.38Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_POLMU9.517e-2288.46Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB215_PEA8.056e-2184.62Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC5.222e-2088.24Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.519e-1986.27Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_PHYPA2.592e-1988.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO4.138e-1782.00Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00409 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00409 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623318 ID=BQ623318; Name=BQ623318; organism=Citrus sinensis; type=EST; length=266bp
ATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCA
GGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGG
CTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCC
GGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGA
TATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGA
TTATTTATAAAATGCT
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