BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PROM1 (Tryptophan synthase alpha chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.381e-27
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            + LVL   PTTP DRMK I   S GF YLVS  GVTG R+S+  +V +L++++K+SS+ P+AVGFGIS  +H++QV  WGADG IVGSA+VK +  A S E  ++E   F K L++A
Sbjct:  149 IDLVLLVAPTTPKDRMKKIAATSNGFTYLVSVTGVTGERSSLEDNVGSLVQQLKDSSSSPIAVGFGISDVKHIEQVREWGADGAIVGSALVKRIANA-SIEMKVEEAGSFCKELRAA 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GLOVI (Tryptophan synthase alpha chain OS=Gloeobacter violaceus GN=trpA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.785e-26
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L ++    PT+P +R++ I E + GFVYLVS+ GVTGAR  ++  V+T L +++  +T+PVAVGFGIS PE   +VA  GADGVIVGSA V+LL  A +PEE L +L +F + LK A
Sbjct:  153 LDVIWLVAPTSPPERLRRIAERTTGFVYLVSTTGVTGARTQVASSVRTSLAQLRALTTRPVAVGFGISTPEQAHEVASLGADGVIVGSACVQLLATA-APEERLGQLAEFCRQLKKA 268          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PROMM (Tryptophan synthase alpha chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.375e-25
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L LVL   PTTP +RM  I E+S GF YLVS  GVTG R+ +   VQ+L++++K S + PVAVGFGIS P+ V+QV  WGADG IVGSA+VK +  A +P    +E   F K L++A
Sbjct:  158 LDLVLLVAPTTPAERMARIAESSRGFTYLVSVTGVTGERSVMEDRVQSLVQQLKLSGSNPVAVGFGISGPQQVRQVRSWGADGAIVGSALVKRMA-AAAPGLVAQEAGLFCKELRNA 273          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PROMP (Tryptophan synthase alpha chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.023e-25
Identity = 55/117 (47.01%), Postives = 79/117 (67.52%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            + L+L   PTTP++RMK I   ++GF YLVS  GVTG R  +   V+ L+ +++E S  PVAVGFGIS PEHV +V  WGADGVI+GSA VK +  + + +E + ++ KF + ++ A
Sbjct:  161 IDLILLVAPTTPSERMKIISNNTKGFTYLVSVTGVTGERNKMENRVENLITKLQEISINPVAVGFGISSPEHVNKVRKWGADGVIIGSAFVKRISNS-NEKEVVNQIGKFCEEMRKA 276          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ACAM1 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.178e-24
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + + L   PT+  +R++ I   S+GF+YLVS+ GVTG R  +   VQ L+ ++++ + KP+ VGFGIS+ EH +QV  WGAD  IVGSA V  L E  SP +GL  +  F +SLKS+L
Sbjct:  147 IEVTLLVAPTSSKERIEKIALRSQGFIYLVSTTGVTGMRTKVENRVQDLIADLRQVTDKPIGVGFGISRTEHARQVMDWGADAAIVGSAFVNRLSEG-SPSQGLSAISTFCRSLKSSL 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PROMA (Tryptophan synthase alpha chain OS=Prochlorococcus marinus GN=trpA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.239e-24
Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L LVL   PTTP +RM+ I + S GF YLVS  GVTG R+++   VQ L+ E++  S+ PVAVGFGIS  +HV QV  WGADG I+GSA+VK +  A + +E  +E  KF   L  A
Sbjct:  149 LDLVLLVAPTTPKERMRKISQRSNGFTYLVSVTGVTGERSALENRVQLLINELRGFSSTPVAVGFGISDTKHVIQVKRWGADGAIIGSALVKRISNATTGQEA-EEAGKFCSELYKA 264          

HSP 2 Score: 21.1718 bits (43), Expect = 1.239e-24
Identity = 8/19 (42.11%), Postives = 12/19 (63.16%), Query Frame = 1
Query:    1 VPLEETESLQKEAMKNKIE 57
            +PLEETE L   A+   ++
Sbjct:  132 LPLEETEKLSSIALSKNLD 150          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ANAVT (Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 54/118 (45.76%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+L   PT+ ++R++AI  +S+GF+YLVS  GVTG R+ + G V  LL+++++ + KP+ VGFGIS+P    QV  WGAD  IVGSA V+ L    +P EGL  + +F +SLK+A+
Sbjct:  147 IDLILLIAPTSSSERIEAIARSSQGFIYLVSVTGVTGMRSQVEGRVLDLLQKVRQVTDKPLGVGFGISQPAQATQVRDWGADAAIVGSAFVQRLATG-TPAEGLSAIAEFCQSLKAAI 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYNPX (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain WH8102) GN=trpA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.010e-24
Identity = 63/120 (52.50%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL---GEAQSPEEGLKELEKFAKSLKSA 403
            L LVL   PTTP DRM  I + S GF YLVS  GVTG RA +   V+ L+ E+K+SS  PVAVGFGIS  + V+QV  WGADG IVGSA+VK +   GE Q  EE      +F + L++A
Sbjct:  152 LDLVLLVAPTTPADRMVRIGQRSRGFTYLVSVTGVTGERAQMETRVEGLVEELKQSSAVPVAVGFGISGADQVRQVRSWGADGAIVGSALVKRMAAAGEGQIAEEA----GQFCRELRNA 267          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYNS9 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain CC9902) GN=trpA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.222e-23
Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ----SPEEGL--KELEKFA 385
            L LVL   PTTPT+RM  I ++S GF YLVS  GVTG R+++   V+ L++ +K+SS  PVAVGFGIS  + V+QV  WGADG IVGSA+VK +  A     + E GL   EL K A
Sbjct:  152 LDLVLLVAPTTPTERMGRIAQSSRGFTYLVSVTGVTGERSTMETRVEGLVQALKQSSPVPVAVGFGISGVDQVRQVRSWGADGAIVGSALVKRMASASLGSVAAEAGLFCSELRKAA 268          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METJA (Tryptophan synthase alpha chain OS=Methanocaldococcus jannaschii GN=trpA PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 56/125 (44.80%), Postives = 81/125 (64.80%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-------GEAQSPEEGLKELEKFAKSLK 397
            K  + L+    PTTP +R+K I+E   GFVY+VS  G+TGAR  ++   + L++ +K+ S  P  VGFGISK EHV+++    ADG IVGSA+VK++       G+ +  E+ LKELE+F K+LK
Sbjct:  145 KYGVDLIFLVAPTTPDERLKKILEKCSGFVYVVSVTGITGAREKVAEETKELIKRVKKFSKIPACVGFGISKREHVEEITEI-ADGAIVGSAIVKIVEKHLDENGQIKDEEKFLKELEEFVKNLK 268          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_PROM17.381e-2752.14Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_GLOVI4.785e-2651.28Tryptophan synthase alpha chain OS=Gloeobacter vio... [more]
TRPA_PROMM2.375e-2552.14Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_PROMP9.023e-2547.01Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_ACAM11.178e-2445.76Tryptophan synthase alpha chain OS=Acaryochloris m... [more]
TRPA_PROMA1.239e-2450.43Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_ANAVT1.539e-2445.76Tryptophan synthase alpha chain OS=Anabaena variab... [more]
TRPA_SYNPX2.010e-2452.50Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_SYNS92.222e-2352.14Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_METJA1.441e-2244.80Tryptophan synthase alpha chain OS=Methanocaldococ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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