BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_AERHH (Tryptophan synthase alpha chain OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            Y+    K  +  +    P    + +K + E   G+ YLVS  GVTGA       V+ L+  ++E +  P  +GFGIS+P  V++    GA G I GSA+VK++    Q+PE  L  L++F + +K+A
Sbjct:  139 YKAAADKFGIDSIFIAPPNGDAETLKQVAELGNGYTYLVSRAGVTGAETKAGMPVEGLINTLREFNAPPALLGFGISEPTQVREAIAAGAAGAISGSAVVKIIETHHQNPEHMLNRLKEFVEGMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPF (Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            +  +  TTPTT   R+  ++  S GFVY VS  GVTGA A+   HV+  +  ++  +  P+++GFGI  PE    +A   ADGV+VGSA++  +  A +P++ +  +     +L   +
Sbjct:  148 IDFIRLTTPTTDDARLPKVLNGSSGFVYYVSVAGVTGAGAATLEHVEEAVARLRRHTDLPISIGFGIRTPEQAASIARL-ADGVVVGSALIDHIANATTPDQAIDGVLSLCSALSEGV 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEF5 (Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 364
            +  +  TTPTT   R+  +++ S GFVY VS  GVTGA A+   HV+  +  ++  +  P+++GFGI  PE    +A   ADGV+VGSA++  +  A+S E+ +
Sbjct:  148 IDFIRLTTPTTDDARLPKVLDGSSGFVYYVSVAGVTGAGAATLEHVEEAVARLRRHTDLPISIGFGIRTPEQAAAIARL-ADGVVVGSALIDHIASAESSEQAV 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACLD (Tryptophan synthase alpha chain OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=trpA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 47/124 (37.90%), Postives = 74/124 (59.68%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-------AQSPEEGLKELEKFAKSLKSA 403
            ++ +    PT+ + R++ I + +EGFVY VSS+GVTG R      V + +R +K  S+ PVAVGFGIS  + V+ +    ADGV+VGSA+V+ + E        ++ E+ LK  E +AK+   +
Sbjct:  142 ITYISLVAPTSES-RIQKITQQAEGFVYCVSSLGVTGVRNEFEDSVSSFIRSVKGMSSVPVAVGFGISSSKQVEMMNEL-ADGVVVGSALVRKIEELKDELVAPETREQALKAFEAYAKTFSGS 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HERA2 (Tryptophan synthase alpha chain OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=trpA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L LV    PT+   R+  I   S GF+Y V+  GVTGARA+++  +   L  +++ S  P AVGFGISKPEHV  VA   A+G I  SA++  +G   + EE     ++F +SL+ A
Sbjct:  148 LDLVFLLAPTSTDARIAKIASLSSGFIYCVALRGVTGARAALADDLGDFLARVRQYSQLPRAVGFGISKPEHVAAVAKM-AEGAICASALLDYIGNLPA-EERATGAQQFVQSLRDA 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_THETN (Tryptophan synthase alpha chain OS=Thermoanaerobacter tengcongensis GN=trpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            K  + L+    PT+  +R+K I E  +GFVY V+  GVTGAR  I+  ++  +R +   ++ P A+GFGIS PE  +++    +DG++VGSA+V+ + +  +  E LKE+++F  SL+  L
Sbjct:  144 KYEIYLIPLVAPTSK-ERIKGITENGKGFVYCVTLTGVTGAREEITTDLEEYMRLVSSYTSMPKALGFGISGPEMARKLKSL-SDGIVVGSAIVERIAKGYNRCEMLKEVKEFVLSLREVL 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_STRCO (Tryptophan synthase alpha chain OS=Streptomyces coelicolor GN=trpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   23 LYRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            L+R    K  L+ V    P++   R+  I     GFVY  S +GVTG RAS+    + L+R  + ++  PV VG G+S      +VAG+ ADGVIVGSA VK + +A     GL+ +   A  L
Sbjct:  141 LWREHADKHGLATVFVVAPSSRDARLAEITAVGSGFVYAASLMGVTGTRASVGAQAEDLVRRTRATTDTPVCVGLGVSNAAQAAEVAGF-ADGVIVGSAFVKRMLDAPDDAAGLEGVRALAADL 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MYCPA (Tryptophan synthase alpha chain OS=Mycobacterium paratuberculosis GN=trpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L  +    P++   R+   VEAS GFVY  S++GVTGAR ++S     L+  ++E S  PV VG G+   E   Q+ G+ ADGVIVGSA+V  LG+      GL  L    + L + +
Sbjct:  153 LDRIFLVAPSSTPQRLALTVEASRGFVYAASTMGVTGARDAVSHAAPELVSRVREISDIPVGVGLGVRSREQAAQIGGY-ADGVIVGSALVSALGDG-----GLTALRALTEELAAGV 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MYCA1 (Tryptophan synthase alpha chain OS=Mycobacterium avium (strain 104) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L  +    P++   R+   VEAS GFVY  S++GVTGAR ++S     L+  ++E S  PV VG G+   E   Q+ G+ ADGVIVGSA+V  LG+      GL  L    + L + +
Sbjct:  153 LDRIFLVAPSSTPQRLALTVEASRGFVYAASTMGVTGARDAVSHAAPELVSRVREISDIPVGVGLGVRSREQAAQIGGY-ADGVIVGSALVSALGDG-----GLTALRALTEELAAGV 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_AERS4 (Tryptophan synthase alpha chain OS=Aeromonas salmonicida (strain A449) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            Y+    K  +  +    P    + +K + E   G+ YLVS  GVTGA       V  L+  ++E +  P  +GFGIS+P  V++    GA G I GSA+VK++    Q+PE  L  L++F + +K+A
Sbjct:  139 YKAAADKFGIDSIFIAPPNGDAETLKQVAELGSGYTYLVSRAGVTGAETKAGMPVDGLINTLREFNAPPALLGFGISEPAQVREAIAAGAAGAISGSAVVKIIETHHQNPEHMLTRLKEFVEGMKAA 265          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_AERHH2.228e-1533.86Tryptophan synthase alpha chain OS=Aeromonas hydro... [more]
TRPA_PSEPF2.909e-1533.90Tryptophan synthase alpha chain OS=Pseudomonas flu... [more]
TRPA_PSEF52.909e-1538.46Tryptophan synthase alpha chain OS=Pseudomonas flu... [more]
TRPA_BACLD2.909e-1537.90Tryptophan synthase alpha chain OS=Bacillus lichen... [more]
TRPA_HERA23.800e-1541.03Tryptophan synthase alpha chain OS=Herpetosiphon a... [more]
TRPA_THETN4.963e-1537.19Tryptophan synthase alpha chain OS=Thermoanaerobac... [more]
TRPA_STRCO4.963e-1537.90Tryptophan synthase alpha chain OS=Streptomyces co... [more]
TRPA_MYCPA4.963e-1538.98Tryptophan synthase alpha chain OS=Mycobacterium p... [more]
TRPA_MYCA14.963e-1538.98Tryptophan synthase alpha chain OS=Mycobacterium a... [more]
TRPA_AERS44.963e-1533.86Tryptophan synthase alpha chain OS=Aeromonas salmo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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