BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYNFM (Tryptophan synthase alpha chain OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.482e-15
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L+L+    PTTP DRM AI +++ GF+YLVS  GVTG        +  L  E++      PV VGFGIS PEH + V+   ADGV+VG+A  +++   Q+      ++ +   +LK+AL
Sbjct:  147 LALIRLVAPTTPPDRMSAIAQSASGFIYLVSMTGVTGGGEPDLTELSFLTSELRSRCDGIPVCVGFGISLPEHARAVSPL-ADGVVVGTAFERIIEAHQNDSAVASKVGEAVGALKAAL 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_IDILO (Tryptophan synthase alpha chain OS=Idiomarina loihiensis GN=trpA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.482e-15
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +I +  V    P      +  I +   G+VYL+S  GVTGA   +      L+ ++KE+   P  +GFGIS+PEHVQ+    GADG I GSA+V L+ +   +  + + +L+ F KS+K+A
Sbjct:  145 EIGIEAVFIAPPDASDALLIDIAKQCAGYVYLLSRSGVTGADTQMQAPASELINKLKEAGAPPTLLGFGISQPEHVQRALAAGADGAISGSAVVALIEKNLDNNAQQVADLKAFVKSMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HELPJ (Tryptophan synthase alpha chain OS=Helicobacter pylori J99 GN=trpA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.482e-15
Identity = 36/109 (33.03%), Postives = 64/109 (58.72%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE 370
            K ++  +   +P   +  ++ +   S+G++Y ++  GVTGA  ++      +++ +K  S+ P  +GFGISK EH+    G GADGVI GSA+VK++ E  + E+ + E
Sbjct:  143 KHQIKQIFIASPNASSKDLEQVATHSQGYIYTLARSGVTGASHTLENDASAIIKTLKTFSSTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLNNEDAMLE 251          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_FRATW (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.482e-15
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K+ ++ +    P      +K I E   G+ YL+S +GVTG   + +  V+ +L +++E +     +GFGISKPE VQQ    GA G I GSA VK++     + ++ L EL  F K +K+A
Sbjct:  146 KVSIAQIFIAPPDASESTLKQISELGSGYTYLLSRVGVTGTETAANMPVEDVLTKLREYNAPKPVLGFGISKPEQVQQAIKAGAAGAISGSATVKIIQNNISNKQKMLNELTYFVKEMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS5 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L+ +   TPTT   R+  +++ + GFVY VS  G+TGA A+ +  V   +  +K ++  PV VGFGI+ PE  + +AG  ADG +VGSA+VKL+ E +   E L  +   A    +A
Sbjct:  148 LNFIRLATPTTDDRRLPKVLQNTSGFVYYVSITGITGAAAAQAVDVAPEVARLKAATDLPVIVGFGITSPEAARDIAG-VADGCVVGSAIVKLVAEGRPVAEVLDRVAALAAGAHAA 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HALVO (Tryptophan synthase alpha chain OS=Halobacterium volcanii GN=trpA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE----AQSPEEGLKELEKFAKSLK 397
            L LV    PTT  +R+  I+E   G+VY+ + +G TGA++S+S    + L  + +    P AVGFGIS  +H +++   GADG+IVGSA+V ++ E        E     LE  A+ L+
Sbjct:  143 LDLVFIVAPTTRGERLDRIMEQVSGYVYVQARLGTTGAQSSVSDQTDSSLERLTDYDV-PKAVGFGISDGDHAERIVASGADGIIVGSALVDIVAEGHENGDDAETVADRLETLARELE 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSF (Tryptophan synthase alpha chain OS=Geobacter sp. (strain FRC-32) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L+++   TPT+  +R++ +     GF+Y VS  GVTGAR+S++ +V + +++I++  T PV VGFGIS P     +A   ADGV+VGSA+V+   E  S +E   +L     +LK+ +
Sbjct:  147 LAVIFLLTPTSDEERIRKVAHLGSGFIYYVSVTGVTGARSSVAENVFSDVQKIRKRVTLPVVVGFGISDPAQAGSIAS-VADGVVVGSALVRQF-EQFSGKELHTKLSTMVSALKAGI 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_FRATT (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. tularensis GN=trpA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K+ ++ +    P      +K I E   G+ YL+S +GVTG   + +  V+ +L +++E +     +GFGISKPE VQQ    GA G I GSA VK++     + ++ L EL  F K +K+A
Sbjct:  146 KVGIAQIFIAPPDASESTLKQISELGSGYTYLLSRVGVTGTETAANMPVEDVLTKLREYNAPKPVLGFGISKPEQVQQAIKAGAAGAISGSATVKIIQNNISNKQKMLNELTYFVKEMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_FRATM (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K+ ++ +    P      +K I E   G+ YL+S +GVTG   + +  V+ +L +++E +     +GFGISKPE VQQ    GA G I GSA VK++     + ++ L EL  F K +K+A
Sbjct:  146 KVGIAQIFIAPPDASESTLKQISELGSGYTYLLSRVGVTGTETAANMPVEDVLAKLREYNAPKPVLGFGISKPEQVQQAIKAGAAGAISGSATVKIIQNNISNKQKMLNELTYFVKEMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_FRAT1 (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K+ ++ +    P      +K I E   G+ YL+S +GVTG   + +  V+ +L +++E +     +GFGISKPE VQQ    GA G I GSA VK++     + ++ L EL  F K +K+A
Sbjct:  146 KVGIAQIFIAPPDASESTLKQISELGSGYTYLLSRVGVTGTETAANMPVEDVLTKLREYNAPKPVLGFGISKPEQVQQAIKAGAAGAISGSATVKIIQNNISNKQKMLNELTYFVKEMKAA 266          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_SYNFM6.482e-1539.50Tryptophan synthase alpha chain OS=Syntrophobacter... [more]
TRPA_IDILO6.482e-1536.36Tryptophan synthase alpha chain OS=Idiomarina loih... [more]
TRPA_HELPJ6.482e-1533.03Tryptophan synthase alpha chain OS=Helicobacter py... [more]
TRPA_FRATW6.482e-1535.54Tryptophan synthase alpha chain OS=Francisella tul... [more]
TRPA_RHOS58.465e-1538.46Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]
TRPA_HALVO8.465e-1536.97Tryptophan synthase alpha chain OS=Halobacterium v... [more]
TRPA_GEOSF8.465e-1538.14Tryptophan synthase alpha chain OS=Geobacter sp. (... [more]
TRPA_FRATT8.465e-1535.54Tryptophan synthase alpha chain OS=Francisella tul... [more]
TRPA_FRATM8.465e-1535.54Tryptophan synthase alpha chain OS=Francisella tul... [more]
TRPA_FRAT18.465e-1535.54Tryptophan synthase alpha chain OS=Francisella tul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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