BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOTN (Tryptophan synthase alpha chain OS=Geobacillus thermodenitrificans (strain NG80-2) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 53/131 (40.46%), Postives = 74/131 (56.49%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV----KLLGEAQSPEEGLKELEKFAKSLKS-ALP*EQ*CRS 430
            L L+    PT+   R++ I  A++GF+Y VSS+GVTG R ++   +   L E+K  S  PV VGFGIS PE V  +     DGV+VGSA+V    +LL   Q+ EE    + +FA   +S A P  + C S
Sbjct:  139 LPLISLVAPTSK-QRIEQIASAAQGFLYCVSSLGVTGVRETLPESLGHFLGEVKRHSRVPVVVGFGISTPEQVAMLKD-ACDGVVVGSALVQKIEQLLERLQTLEEKNAAIAEFASYARSLAAPLREPCSS 267          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSW (Tryptophan synthase alpha chain OS=Geobacillus sp. (strain WCH70) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK-------LLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+    PT+   R++ I   ++GF+Y VSS+GVTG R ++   +   L E+K  S  PV VGFGIS  E V  +  +  DGV++GSA+V+       LL   +  EE L E  ++A+SL + L
Sbjct:  140 IPLISLVAPTSKK-RIEMIASNAQGFLYCVSSLGVTGVRDTLPETLNDFLTEVKRHSRVPVVVGFGISTSEQVSMLKNY-CDGVVIGSALVQKIEQLNDLLQTEEKKEEALAEFRRYARSLTAPL 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_VIBCM (Tryptophan synthase alpha chain OS=Vibrio cholerae serotype O1 (strain M66-2) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K  +  +    PT   + ++A+ +  +G+ YL+S  GVTGA    +  V  LL  +++    P  +GFGIS+P  V+Q    GA G I GSA+VK++     +P + L EL  F +++K A
Sbjct:  145 KFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQAMKKA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_VIBCH (Tryptophan synthase alpha chain OS=Vibrio cholerae GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K  +  +    PT   + ++A+ +  +G+ YL+S  GVTGA    +  V  LL  +++    P  +GFGIS+P  V+Q    GA G I GSA+VK++     +P + L EL  F +++K A
Sbjct:  145 KFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQAMKKA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_VIBC3 (Tryptophan synthase alpha chain OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K  +  +    PT   + ++A+ +  +G+ YL+S  GVTGA    +  V  LL  +++    P  +GFGIS+P  V+Q    GA G I GSA+VK++     +P + L EL  F +++K A
Sbjct:  145 KFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQAMKKA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SPHWW (Tryptophan synthase alpha chain OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            +   TPTT   R+ A++E + GF+Y VS  G+TG + +    ++  +   K ++  PVAVGFG+  PE  + + G  ADGV+VGSA+V L+GE  +   G   +  F  +L +AL
Sbjct:  151 IRLATPTTDAARLPAVLEGASGFLYYVSVAGITGMQQAGQASIEAAVARFKAATDLPVAVGFGVRGPEQAEAI-GRVADGVVVGSAIVDLIGEHGAAAAG--PVRDFTATLSAAL 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MYCLE (Tryptophan synthase alpha chain OS=Mycobacterium leprae GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            K RL  +    P++   R+   V AS GFVY VS +GVTGAR ++S  V  L+  +K  S   V VG G+   E   Q+ G+ ADGVIVGSA+V  LG      +GL  L   A+ L + +
Sbjct:  151 KHRLDRIFLVAPSSTPHRLVTTVGASRGFVYAVSVMGVTGARDAVSQVVPELVARVKAVSDIAVGVGLGVRSREQAAQIGGY-ADGVIVGSALVSALG------DGLPRLRALAEELAAGV 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MYCLB (Tryptophan synthase alpha chain OS=Mycobacterium leprae (strain Br4923) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            K RL  +    P++   R+   V AS GFVY VS +GVTGAR ++S  V  L+  +K  S   V VG G+   E   Q+ G+ ADGVIVGSA+V  LG      +GL  L   A+ L + +
Sbjct:  151 KHRLDRIFLVAPSSTPHRLVTTVGASRGFVYAVSVMGVTGARDAVSQVVPELVARVKAVSDIAVGVGLGVRSREQAAQIGGY-ADGVIVGSALVSALG------DGLPRLRALAEELAAGV 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_LEPBP (Tryptophan synthase alpha chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 38/96 (39.58%), Postives = 62/96 (64.58%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 340
            + L+   TP +   R++A+ + S GF+Y V+S GVTG R   S  ++  +R +K++   P+  GFGIS PE   Q+AG+ ADG+I+GSA+ +++ E
Sbjct:  148 MDLIHLVTPASTKKRIEALRKTSTGFIYYVTSFGVTGERREFSVDLKERIRFLKDTIQLPICAGFGISTPEQASQIAGY-ADGIIIGSAIQRVIEE 242          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_LEPBA (Tryptophan synthase alpha chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 38/96 (39.58%), Postives = 62/96 (64.58%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 340
            + L+   TP +   R++A+ + S GF+Y V+S GVTG R   S  ++  +R +K++   P+  GFGIS PE   Q+AG+ ADG+I+GSA+ +++ E
Sbjct:  148 MDLIHLVTPASTKKRIEALRKTSTGFIYYVTSFGVTGERREFSVDLKERIRFLKDTIQLPICAGFGISTPEQASQIAGY-ADGIIIGSAIQRVIEE 242          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_GEOTN1.106e-1440.46Tryptophan synthase alpha chain OS=Geobacillus the... [more]
TRPA_GEOSW1.106e-1437.60Tryptophan synthase alpha chain OS=Geobacillus sp.... [more]
TRPA_VIBCM1.444e-1433.88Tryptophan synthase alpha chain OS=Vibrio cholerae... [more]
TRPA_VIBCH1.444e-1433.88Tryptophan synthase alpha chain OS=Vibrio cholerae... [more]
TRPA_VIBC31.444e-1433.88Tryptophan synthase alpha chain OS=Vibrio cholerae... [more]
TRPA_SPHWW1.444e-1437.39Tryptophan synthase alpha chain OS=Sphingomonas wi... [more]
TRPA_MYCLE1.444e-1440.50Tryptophan synthase alpha chain OS=Mycobacterium l... [more]
TRPA_MYCLB1.444e-1440.50Tryptophan synthase alpha chain OS=Mycobacterium l... [more]
TRPA_LEPBP1.444e-1439.58Tryptophan synthase alpha chain OS=Leptospira bifl... [more]
TRPA_LEPBA1.444e-1439.58Tryptophan synthase alpha chain OS=Leptospira bifl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
back to top