BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HELPH (Tryptophan synthase alpha chain OS=Helicobacter pylori (strain HPAG1) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKE 370
            K ++  +   +P      ++ +   S+G++Y ++  GVTGA  ++      +++ +K  S+ P  +GFGISK EH+    G GADGVI GSA+VK++ E  + E  + E
Sbjct:  143 KHQIKQIFIASPNASVKDLEQVATHSQGYIYTLARSGVTGASHTLKNDASAIIKTLKTFSSTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLNNENAMLE 251          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACC3 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain 03BB102) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R+K I+  SEGFVY V+  GVTG R +    + + L ++K  +  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIKKIMSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACAH (Tryptophan synthase alpha chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R+K I+  SEGFVY V+  GVTG R +    + + L ++K  +  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIKKIMSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_THET8 (Tryptophan synthase alpha chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 400
            +I L  V    PT+   R+  +V  + GFVY VS  GVTG R  +   V+ L+R IK  +  PVAVGFG+S      Q A   ADGV+VGSA+V+ L E +S    L+E+ +  + L++
Sbjct:  142 EIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQAA--VADGVVVGSALVRALEEGRSLAPLLQEIRQGLQRLEA 258          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_THET2 (Tryptophan synthase alpha chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=trpA PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 400
            +I L  V    PT+   R+  +V  + GFVY VS  GVTG R  +   V+ L+R IK  +  PVAVGFG+S      Q A   ADGV+VGSA+V+ L E +S    L+E+ +  + L++
Sbjct:  142 EIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQAA--VADGVVVGSALVRALEEGRSLAPLLQEIRQGLQRLEA 258          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ROSS1 (Tryptophan synthase alpha chain OS=Roseiflexus sp. (strain RS-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLK 397
            L L+ F  PTTP +R+  I   + GF+Y V+  GVTGAR  +   +   L  ++  ++ P+ VGFGIS   HV++ AG  A G IV SA++ ++ +A  P E +     F +SL+
Sbjct:  148 LDLIFFVAPTTPDERIDRIAALASGFIYCVALTGVTGARRELWSGLPAFLERVRRRTSLPLVVGFGISSAAHVRE-AGRYAAGAIVASALINVIEQA-PPGEYVARAVDFVRSLR 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_OPITP (Tryptophan synthase alpha chain OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSL 394
            V    PT+P +R+  I +A+ GF+Y VS  GVTG +  ++ ++   +  I+  +  PV VGFGIS  E V+QVA   ADGV+VGSA+V  + E   SPE    +L   A  L
Sbjct:  150 VYIVAPTSPAERIAKIAQAATGFIYYVSREGVTGVQERVAANIPEAVAAIRRHTALPVVVGFGISNREQVRQVAA-VADGVVVGSALVNCIRENLGSPERITAKLAAVAGDL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACHK (Tryptophan synthase alpha chain OS=Bacillus thuringiensis subsp. konkukian GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R+K I   SEGFVY V+  GVTG R +    + + L ++K  +  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACCZ (Tryptophan synthase alpha chain OS=Bacillus cereus (strain ZK / E33L) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R+K I   SEGFVY V+  GVTG R +    + + L ++K  +  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACC0 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain AH820) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R+K I   SEGFVY V+  GVTG R +    + + L ++K  +  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_HELPH1.444e-1433.03Tryptophan synthase alpha chain OS=Helicobacter py... [more]
TRPA_BACC31.444e-1439.60Tryptophan synthase alpha chain OS=Bacillus cereus... [more]
TRPA_BACAH1.444e-1439.60Tryptophan synthase alpha chain OS=Bacillus thurin... [more]
TRPA_THET81.886e-1440.34Tryptophan synthase alpha chain OS=Thermus thermop... [more]
TRPA_THET21.886e-1440.34Tryptophan synthase alpha chain OS=Thermus thermop... [more]
TRPA_ROSS11.886e-1437.39Tryptophan synthase alpha chain OS=Roseiflexus sp.... [more]
TRPA_OPITP1.886e-1441.07Tryptophan synthase alpha chain OS=Opitutus terrae... [more]
TRPA_BACHK1.886e-1439.60Tryptophan synthase alpha chain OS=Bacillus thurin... [more]
TRPA_BACCZ1.886e-1439.60Tryptophan synthase alpha chain OS=Bacillus cereus... [more]
TRPA_BACC01.886e-1439.60Tryptophan synthase alpha chain OS=Bacillus cereus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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