BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACAN (Tryptophan synthase alpha chain OS=Bacillus anthracis GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R+K I   SEGFVY V+  GVTG R +    + + L ++K  +  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACAC (Tryptophan synthase alpha chain OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R+K I   SEGFVY V+  GVTG R +    + + L ++K  +  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACAA (Tryptophan synthase alpha chain OS=Bacillus anthracis (strain A0248) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R+K I   SEGFVY V+  GVTG R +    + + L ++K  +  PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGVRQNFKDEIHSYLEKVKSHTHLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSESY (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. syringae GN=trpA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 364
            +  +  TTPTT   R+  ++  S GFVY VS  GVTGA A+   HV+  +  ++  +  P+++GFGI  PE    +A   ADGV+VGSA++  +  A++ ++ +
Sbjct:  148 IDFIRLTTPTTDDVRLPTVLNGSSGFVYYVSVAGVTGAGAATLEHVEEAVARLRRHTDLPISIGFGIRTPEQAAAIARL-ADGVVVGSALIDHIANAKNDQQAI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PETMO (Tryptophan synthase alpha chain OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 42/114 (36.84%), Postives = 70/114 (61.40%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG--LKELEKFAKSLK 397
            +L   P T  +R+K I +   GF+Y VS +GVTG   +   H++   + +++    P+A+GFGI  P   + +  +  DG+IVGSA++K++ E  S ++G  LKE+++F KSLK
Sbjct:  145 ILLVAPNTSEERLKEISKVCSGFLYCVSIMGVTGDSQAPMEHLKEYSQRVRKYVNIPLAIGFGIDSPTKAKNIIEY-FDGIIVGSALIKIIDE-NSDDKGKLLKEIKRFTKSLK 256          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_FRATO (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K+ ++ +    P      +K I +   G+ YL+S +GVTG   + +  V+ +L +++E +     +GFGISKPE VQQ    GA G I GSA VK++     + ++ L EL  F K +K+A
Sbjct:  146 KVGIAQIFIAPPDASESTLKQISKLGSGYTYLLSRVGVTGTETAANMPVEDVLAKLREYNAPKPVLGFGISKPEQVQQAIKAGAAGAISGSATVKIIQNNISNKQKMLNELTYFVKEMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_FRATH (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. holarctica (strain LVS) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K+ ++ +    P      +K I +   G+ YL+S +GVTG   + +  V+ +L +++E +     +GFGISKPE VQQ    GA G I GSA VK++     + ++ L EL  F K +K+A
Sbjct:  146 KVGIAQIFIAPPDASESTLKQISKLGSGYTYLLSRVGVTGTETAANMPVEDVLAKLREYNAPKPVLGFGISKPEQVQQAIKAGAAGAISGSATVKIIQNNISNKQKMLNELTYFVKEMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_FRATF (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K+ ++ +    P      +K I +   G+ YL+S +GVTG   + +  V+ +L +++E +     +GFGISKPE VQQ    GA G I GSA VK++     + ++ L EL  F K +K+A
Sbjct:  146 KVGIAQIFIAPPDASESTLKQISKLGSGYTYLLSRVGVTGTETAANMPVEDVLAKLREYNAPKPVLGFGISKPEQVQQAIKAGAAGAISGSATVKIIQNNISNKQKMLNELTYFVKEMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEFS (Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain SBW25) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 364
            +  +  TTPTT   R+  ++  S GFVY VS  GVTGA A+   HV+  +  ++  +  P+++GFGI  PE    +A   ADGV+VGSA++  +  A + ++ +
Sbjct:  148 IDFIRLTTPTTDDVRLPTVLNGSSGFVYYVSVAGVTGAGAATLEHVEEAVTRLRRHTDLPISIGFGIRTPEQAAAIARL-ADGVVVGSALIDHIANASNDQQAI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACCR (Tryptophan synthase alpha chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++ ++L+   T T+P +R++ I   SEGFVY V+  GVTG R +    + + L ++K     PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  142 EVNIALIPLVTVTSPIERIEKITSESEGFVYAVTVAGVTGVRQNFKEEIHSYLEKVKSHVNLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKVIELLENEKREE 244          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_BACAN1.886e-1439.60Tryptophan synthase alpha chain OS=Bacillus anthra... [more]
TRPA_BACAC1.886e-1439.60Tryptophan synthase alpha chain OS=Bacillus anthra... [more]
TRPA_BACAA1.886e-1439.60Tryptophan synthase alpha chain OS=Bacillus anthra... [more]
TRPA_PSESY2.463e-1436.54Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_PETMO2.463e-1436.84Tryptophan synthase alpha chain OS=Petrotoga mobil... [more]
TRPA_FRATO2.463e-1434.71Tryptophan synthase alpha chain OS=Francisella tul... [more]
TRPA_FRATH2.463e-1434.71Tryptophan synthase alpha chain OS=Francisella tul... [more]
TRPA_FRATF2.463e-1434.71Tryptophan synthase alpha chain OS=Francisella tul... [more]
TRPA_PSEFS3.217e-1436.54Tryptophan synthase alpha chain OS=Pseudomonas flu... [more]
TRPA_BACCR3.217e-1437.50Tryptophan synthase alpha chain OS=Bacillus cereus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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