BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACC2 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain G9842) GN=trpA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            ++L+   T T+P +R++ I   SEGFVY V+  GVTG R +    + + L ++K     PV  GFGIS  EHV+++     DGV+VGS +++LL   +  E
Sbjct:  145 IALIPLVTVTSPIERIEKITSESEGFVYAVTVAGVTGVRQNFKEEIHSYLEKVKLHVNLPVVAGFGISTKEHVEEMVTI-CDGVVVGSKIIELLENEKREE 244          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_TOLAT (Tryptophan synthase alpha chain OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=trpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            +    P    + +K +   S G+ YL+S  GVTGA       V  LL  +KE    P  +GFGIS+PE V+     GA G I GSA+VK++      P   L +L +F K +K+A
Sbjct:  151 IYIAPPNADDETLKTVARLSSGYTYLLSRAGVTGAETRAQMPVDHLLTALKEFGAPPALLGFGISEPEQVKAAITAGAAGAISGSAVVKIIEHNLNEPAVMLDKLTQFVKKMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOP5 (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain BisA53) GN=trpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            K  L+ +   TPTT   R+ A++  + GFVY VS  G+TGA ++ +  V   +  IK  +  PV VGFGI  PE  + +A   ADG +VGSA+V +L  +   E
Sbjct:  146 KAGLNFIRLATPTTDDKRLPAVLANTSGFVYYVSVTGITGAASADASAVSAAVTRIKRHTPLPVCVGFGIRTPEGARDIAR-HADGAVVGSALVDVLSRSLDAE 248          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_AZOC5 (Tryptophan synthase alpha chain OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=trpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVK 328
            L  +   TPTT   R+ A++  + GFVY VS  G+TG+    +  V   +  IK+ +T PVAVGFG+  P     +A  GADGV+VGSA+V+
Sbjct:  149 LDFIRLATPTTDEKRLPAVLAHTAGFVYYVSITGITGSATPDANAVAGAVARIKQHTTLPVAVGFGVKTPAQAAAIAA-GADGVVVGSALVE 239          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MYCUA (Tryptophan synthase alpha chain OS=Mycobacterium ulcerans (strain Agy99) GN=trpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L  +    P++  +R+   V AS GFVY  S++GVTGAR ++S     L+  +K  S  PV VG G+   E   ++ G  ADGVIVGSA+V  LG      +GL  L    + L + +
Sbjct:  153 LDRIFLVAPSSTPERLANTVAASRGFVYAASTMGVTGARDAVSNAAPDLVARVKAVSDIPVGVGLGVRSREQAAEI-GRYADGVIVGSALVSALG------DGLPSLRSLTEELAAGV 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MYCMM (Tryptophan synthase alpha chain OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=trpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L  +    P++  +R+   V AS GFVY  S++GVTGAR ++S     L+  +K  S  PV VG G+   E   ++ G  ADGVIVGSA+V  LG      +GL  L    + L + +
Sbjct:  153 LDRIFLVAPSSTPERLANTVAASRGFVYAASTMGVTGARDAVSNAAPDLVARVKAVSDIPVGVGLGVRSREQAAEI-GRYADGVIVGSALVSALG------DGLPSLRSLTEELAAGV 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HALSA (Tryptophan synthase alpha chain OS=Halobacterium salinarium GN=trpA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE 358
            L LV    PTT  DR + +++ + GFVY+   +G TGAR  +S      L  ++ +   P AVGFG+S  E  +++   GADGVIVGSA V  + +  + ++
Sbjct:  146 LDLVFVVAPTTTADRRERMLDLTTGFVYVQGRVGTTGAREEVSAATPDALAALQHTDI-PKAVGFGVSSGEQAREITASGADGVIVGSAYVDTVADGVADDD 246          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HALS3 (Tryptophan synthase alpha chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=trpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEE 358
            L LV    PTT  DR + +++ + GFVY+   +G TGAR  +S      L  ++ +   P AVGFG+S  E  +++   GADGVIVGSA V  + +  + ++
Sbjct:  146 LDLVFVVAPTTTADRRERMLDLTTGFVYVQGRVGTTGAREEVSAATPDALAALQHTDI-PKAVGFGVSSGEQAREITASGADGVIVGSAYVDTVADGVADDD 246          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_DESOH (Tryptophan synthase alpha chain OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=trpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 2
Query:   56 SLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEA 343
            +L+    PTTP  R+ AI  ++ GF+YLVS  GVTG+    + H+  L  +++  +  P+ VGFG+S  + V ++A   ADGV++GSA  +L+ E+
Sbjct:  148 ALIRLLAPTTPDGRIGAIAASASGFLYLVSMTGVTGSSGLDTTHIADLCAKVQRHTALPICVGFGVSTADDVAKIA-QHADGVVIGSAFERLIEES 242          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CAMJD (Tryptophan synthase alpha chain OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=trpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 39/115 (33.91%), Postives = 76/115 (66.09%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAK 388
            K  ++L+   + TTP +R+K +V+ ++GF+YL++SIG+TG ++     +Q  ++EI+  +  P+ VGFGI   + V+++    ADGVIVG+++VK   + ++ +  +K++E+  K
Sbjct:  136 KYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKYF-KQENLDIIMKDIEEIFK 248          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_BACC22.085e-1338.61Tryptophan synthase alpha chain OS=Bacillus cereus... [more]
TRPA_TOLAT2.723e-1336.52Tryptophan synthase alpha chain OS=Tolumonas auens... [more]
TRPA_RHOP52.723e-1339.42Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_AZOC52.723e-1342.39Tryptophan synthase alpha chain OS=Azorhizobium ca... [more]
TRPA_MYCUA3.557e-1337.29Tryptophan synthase alpha chain OS=Mycobacterium u... [more]
TRPA_MYCMM3.557e-1337.29Tryptophan synthase alpha chain OS=Mycobacterium m... [more]
TRPA_HALSA3.557e-1337.25Tryptophan synthase alpha chain OS=Halobacterium s... [more]
TRPA_HALS33.557e-1337.25Tryptophan synthase alpha chain OS=Halobacterium s... [more]
TRPA_DESOH3.557e-1338.54Tryptophan synthase alpha chain OS=Desulfococcus o... [more]
TRPA_CAMJD3.557e-1333.91Tryptophan synthase alpha chain OS=Campylobacter j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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