BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP6 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trpA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.548e-21
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+L   PT+  DR+ AI + + GF+YLVS  GVTG R  +   V  LL+EI++ + KP+ VGFGIS  E  +QV  WGADGVIVGSA V  L      E+G++ +    + L+ A+
Sbjct:  147 IDLILLIAPTSSADRIAAISKQARGFIYLVSVTGVTGMRQGMQSRVADLLQEIRQGTDKPIGVGFGISGAEQARQVRDWGADGVIVGSAFVNRL-----QEQGVEGVATLCRELRQAI 259          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYNE7 (Tryptophan synthase alpha chain OS=Synechococcus elongatus (strain PCC 7942) GN=trpA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.548e-21
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+L   PT+  DR+ AI + + GF+YLVS  GVTG R  +   V  LL+EI++ + KP+ VGFGIS  E  +QV  WGADGVIVGSA V  L      E+G++ +    + L+ A+
Sbjct:  147 IDLILLIAPTSSADRIAAISKQARGFIYLVSVTGVTGMRQGMQSRVADLLQEIRQGTDKPIGVGFGISGAEQARQVRDWGADGVIVGSAFVNRL-----QEQGVEGVATLCRELRQAI 259          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PORPU (Tryptophan synthase alpha chain OS=Porphyra purpurea GN=trpA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/118 (38.14%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+   +PT+  +R+  IVE + G +YLVS+ GVTG +  ++G ++ L   IK+ + KP+ +GFGIS  E ++++ GW  +G+++GSA VK L  +  PEEGL++++ F  + KS +
Sbjct:  155 IELIFLLSPTSSIERINKIVEQAPGCIYLVSTTGVTGQKPELTGKLKRLTETIKKMTQKPIILGFGISTAEQIKEIKGWNINGIVIGSAFVKRL-SSDFPEEGLRKIKDFCTTAKSII 271          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METTM (Tryptophan synthase alpha chain OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=trpA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-20
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +    PTT   R+K I E S GF YLVS +GVTGAR+ +      L+  +K + + PV VGFG+S+PEHV+ +A  GADGVIVGSA++ L+ +     E  L+E+ +  + +K+A
Sbjct:  146 IFIVAPTTDNQRLKMISEVSSGFHYLVSVMGVTGARSRVEESTLELIERVKGAGSLPVMVGFGVSQPEHVRMLADAGADGVIVGSAIIDLISKNLDDRERMLQEIYEMVRKMKTA 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METTH (Tryptophan synthase alpha chain OS=Methanobacterium thermoautotrophicum GN=trpA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.124e-20
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K  +  +    PTT ++R+K I E S GF YLVS +GVTGAR+ +      L++ +K   + PV VGFG+S+PEHV+ +   GADGVIVGSA++ ++ G     E  L+ + + A +LK+A
Sbjct:  146 KYDIDQIFIVAPTTGSERLKRISEVSSGFHYLVSVMGVTGARSRVEDATIELIKRVKAEGSLPVMVGFGVSRPEHVRMLRDAGADGVIVGSAIIDVISGNLGDRELMLQRIHEMAGTLKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ANTSP (Tryptophan synthase alpha chain OS=Antithamnion sp. GN=trpA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 2
Query:   50 RLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            ++ LVLF  PT+   R+ +I + S G +YLVSS GVTG R  I   V  L   IK+ S K + +GFGIS PEH++++  W  DGV+VGSA VK L  A   ++ +  +    KSLK A
Sbjct:  144 QIELVLFVAPTSSMKRINSISKKSPGCIYLVSSTGVTGVRDDIDIKVMELSNYIKKVSNKFIMLGFGISTPEHIKKIMKWNIDGVVVGSAFVKKL-SALKIDDRISSISSLCKSLKKA 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACSK (Tryptophan synthase alpha chain OS=Bacillus clausii (strain KSM-K16) GN=trpA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 53/126 (42.06%), Postives = 82/126 (65.08%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLG-------EAQSPEEGLKELEKFAKSLKSALP 409
            L+L+    PT+   R+KAI   ++GF+Y VSS+GVTGAR ++   V+  L+ +KE+S  P  VGFGIS  E V+++ G  ADGV++GSA+V+ +G       +A+S +E +KE+E++  SL    P
Sbjct:  144 LALISLVAPTSQ-QRIKAIASRAQGFLYCVSSLGVTGARKTLHPQVEAFLKLVKEASPVPFVVGFGISSYEQVEEM-GRHADGVVIGSAIVEQIGLRCEALKQAESRDEAVKEIEQYVNSLLHPAP 267          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PORYE (Tryptophan synthase alpha chain OS=Porphyra yezoensis GN=trpA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.665e-19
Identity = 40/118 (33.90%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+L   PT+  +R+  I++ + G +YLVS+ GVTG ++ ++  ++ L   +K  + K + +GFGIS  E ++++ GW  +G+++GSA VK L     PE GL++++ F +  K+A+
Sbjct:  145 IELILLLAPTSSRERISKIIKRAPGCIYLVSTTGVTGQKSQLTSQLKELTETVKTMTNKSIILGFGISTTEQIKEIKGWNINGIVIGSAFVKRL-SGNVPEAGLEQIQSFCQDAKNAI 261          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ARCFU (Tryptophan synthase alpha chain OS=Archaeoglobus fulgidus GN=trpA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.399e-19
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            V    P TP DR++A+ E S  FVYLVS+ GVTG R  IS      L+  K    KPVAVGFG+SK +HV+Q+   GADGV+VGSA V+L+ E    E   +++    ++L+S L
Sbjct:  136 VFLAAPNTPEDRLRAMDELS-AFVYLVSTYGVTGERDRISPLAFEALKRAKGICRKPVAVGFGVSKADHVRQLISAGADGVVVGSAFVRLINE--KGERATEDIRALTENLRSGL 247          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GRATL (Tryptophan synthase alpha chain OS=Gracilaria tenuistipitata var. liui GN=trpA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.663e-19
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV-KLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+LF  PT+   R++ I   S G +YLVSS GVTG R +    +Q L   IK ++ K + +GFGI+ P+ + Q+  W  DG++VGSA++  ++GE   P++ L  L  F K LK ++
Sbjct:  145 IELILFVAPTSSQSRIQLIASKSPGCIYLVSSCGVTGLRDNFDVKIQHLANNIKSTTNKLIMLGFGINNPDQISQIINWNIDGIVVGSAIITHIVGEL--PQDMLNSLAHFCKKLKYSI 261          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_SYNP63.548e-2144.07Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_SYNE73.548e-2144.07Tryptophan synthase alpha chain OS=Synechococcus e... [more]
TRPA_PORPU6.052e-2138.14Tryptophan synthase alpha chain OS=Porphyra purpur... [more]
TRPA_METTM3.004e-2043.48Tryptophan synthase alpha chain OS=Methanobacteriu... [more]
TRPA_METTH5.124e-2042.15Tryptophan synthase alpha chain OS=Methanobacteriu... [more]
TRPA_ANTSP1.491e-1944.07Tryptophan synthase alpha chain OS=Antithamnion sp... [more]
TRPA_BACSK1.947e-1942.06Tryptophan synthase alpha chain OS=Bacillus clausi... [more]
TRPA_PORYE5.665e-1933.90Tryptophan synthase alpha chain OS=Porphyra yezoen... [more]
TRPA_ARCFU7.399e-1946.09Tryptophan synthase alpha chain OS=Archaeoglobus f... [more]
TRPA_GRATL9.663e-1938.66Tryptophan synthase alpha chain OS=Gracilaria tenu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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