BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOP2 (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain HaA2) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 334
            K  L+ +   TPTT   R+ A++  + GFVY VS  G+TG+ ++ S  V   +  IK  +  PV VGFGI  PE  + +A   ADG +VGSA++  L
Sbjct:  146 KAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASADSVAVGDAVARIKRHTDLPVCVGFGIRTPEGARAIAA-QADGAVVGSALIDAL 241          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_NITWN (Tryptophan synthase alpha chain OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            K  L+ +   TPTT   R+ A++  + GFVY VS  G+TG+ A+ S  V   +  IK  ++ PV VGFGI  P+  + +A   +DG +VGSA+V  L  +   E
Sbjct:  146 KAGLNFIRLATPTTDDKRLPAVLANTSGFVYYVSITGITGSAAADSTAVGAAVGRIKRHTSLPVCVGFGIRTPDAARGIAE-RSDGAVVGSALVDALSASLDAE 248          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HAEIN (Tryptophan synthase alpha chain OS=Haemophilus influenzae GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASI-SGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            V    P      ++ + + SEG+ YLVS  GVT A     + ++ TL+ ++K  +  P+  GFGI++PE V++    G  G I GSA VK++     + E+ L EL +F +++K+A
Sbjct:  151 VFICPPNADEKTIQGVAKNSEGYTYLVSRAGVTSAENQAHAANLDTLVEKLKAHNAPPILQGFGIAQPEQVKEALSLGTAGAISGSATVKIIERNLDNHEQCLAELAEFVQTMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ACTP7 (Tryptophan synthase alpha chain OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISG-HVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            V    P      ++ I   +EG+ YLVS  GVT A       ++  L+  +K S++ P+  GFGI+KP  V++    G DG I GSA+VK++     S  + L EL KF   +K+A
Sbjct:  151 VFICPPNADQVTIERIANLTEGYTYLVSRSGVTSAENQAHAKNLDNLIESLKRSNSAPILQGFGIAKPAQVKEALALGCDGAISGSAIVKIIERNLDSQTQLLSELAKFVSVMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XANCB (Tryptophan synthase alpha chain OS=Xanthomonas campestris pv. campestris (strain B100) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQT-LLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            ++ L+L+   +PTT   R+  +   ++G++Y VS  GVTGA   +  H  +  LR+++  +  PV  GFGI        +A   ADGV+VGSA+V  L +A       +  E F + L+ AL
Sbjct:  149 EVGLALIALASPTTGEARLDMLCSTAQGYLYYVSFSGVTGAADRLDTHAASDRLRQLRARAGAPVVAGFGIKDAASAAAMA-VDADGVVVGSALVAALADASDVRSARERAEDFLQPLRQAL 269          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_THICR (Tryptophan synthase alpha chain OS=Thiomicrospira crunogena (strain XCL-2) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 2
Query:   50 RLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 364
            +L  +   +PTTP  R+ A+ E   GFVY VS  GVTG++A     V   +  ++E  + PVA+GFGI       ++A  G D +IVGSA+V L+ +  S +  +
Sbjct:  147 QLDRIFLVSPTTPDGRLNAVSEKGSGFVYYVSLKGVTGSKALDVDDVAQHVGHLREKMSMPVAIGFGIRDGNTAYEMAKLG-DAIIVGSALVSLIEQNASEDSAV 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHIE6 (Tryptophan synthase alpha chain OS=Rhizobium etli (strain CIAT 652) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 325
            ++ +   TPTT   R+ A+++ + GFVY VS  G+TG+       V   ++ IK+ +  PV VGFG+   EH  +V G  ADGV+VG+A+V
Sbjct:  149 INFIRLATPTTDEKRLPAVLKNTSGFVYYVSMNGITGSALPDPSLVSGAVQRIKQHTELPVCVGFGVKTAEHA-KVIGGSADGVVVGTAIV 238          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METRJ (Tryptophan synthase alpha chain OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 334
            L+ +   TPTT   R+ A++  + GFVY VS  G+TG      G V   +  I+  +  PV VGFG+    H   +A  GADGV+VGSA+V  L
Sbjct:  149 LAFIRLATPTTDERRLPAVLANTAGFVYYVSITGITGTATPDFGKVSEAVARIRRHTDLPVVVGFGVKTGAHAAAIAK-GADGVVVGSALVDAL 241          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_KLEP7 (Tryptophan synthase alpha chain OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++ E    P   GFGIS PE V      GA G I GSA+VK++      P+  L EL+ F +SLK+A
Sbjct:  139 FRQAAMRHNIAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLHHLVEKLAEYHAAPPLQGFGISAPEQVSAAIDAGAAGAISGSAIVKIIERHLDEPQTMLDELKAFVQSLKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_KLEP3 (Tryptophan synthase alpha chain OS=Klebsiella pneumoniae (strain 342) GN=trpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++ E    P   GFGIS PE V      GA G I GSA+VK++      P+  L EL+ F +SLK+A
Sbjct:  139 FRQAAMRHNIAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLHHLVEKLAEYHAAPPLQGFGISAPEQVSAAIDAGAAGAISGSAIVKIIERHLDEPQTMLDELKAFVQSLKAA 265          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_RHOP25.136e-1240.21Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_NITWN5.136e-1238.46Tryptophan synthase alpha chain OS=Nitrobacter win... [more]
TRPA_HAEIN5.136e-1233.62Tryptophan synthase alpha chain OS=Haemophilus inf... [more]
TRPA_ACTP75.136e-1235.34Tryptophan synthase alpha chain OS=Actinobacillus ... [more]
TRPA_XANCB6.707e-1233.61Tryptophan synthase alpha chain OS=Xanthomonas cam... [more]
TRPA_THICR6.707e-1237.14Tryptophan synthase alpha chain OS=Thiomicrospira ... [more]
TRPA_RHIE66.707e-1239.56Tryptophan synthase alpha chain OS=Rhizobium etli ... [more]
TRPA_METRJ6.707e-1240.43Tryptophan synthase alpha chain OS=Methylobacteriu... [more]
TRPA_KLEP76.707e-1233.07Tryptophan synthase alpha chain OS=Klebsiella pneu... [more]
TRPA_KLEP36.707e-1233.07Tryptophan synthase alpha chain OS=Klebsiella pneu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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