BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECOSM (Tryptophan synthase alpha chain OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVTKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECOL6 (Tryptophan synthase alpha chain OS=Escherichia coli O6 GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECOL5 (Tryptophan synthase alpha chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECOK1 (Tryptophan synthase alpha chain OS=Escherichia coli O1:K1 / APEC GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO81 (Tryptophan synthase alpha chain OS=Escherichia coli O81 (strain ED1a) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO7I (Tryptophan synthase alpha chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVTKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO45 (Tryptophan synthase alpha chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO27 (Tryptophan synthase alpha chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAA 265
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_AGRRK (Tryptophan synthase alpha chain OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 2 
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 325
            ++ +   TPTT   R+ A+++ + GFVY VS  G+TG+       V   ++ IK+ +  PV VGFG+   EH + + G  ADGV+VG+A+V
Sbjct:  149 INFIRLATPTTDEKRLPAVLKNTSGFVYYVSMNGITGSALPDPSLVSGAVKRIKQHTDLPVCVGFGVKTAEHAKLI-GASADGVVVGTAIV 238
[Close]
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SINMW (Tryptophan synthase alpha chain OS=Sinorhizobium medicae (strain WSM419) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 2 
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            +S +   TPTT   R+  ++E + GFVY VS  G+TG+    +  +   +  IK  ++ PV VGFG+   +H + + G  ADGV+VG+A+V  +  + + E
Sbjct:  149 ISFIRLATPTTDDRRLPKVLENTSGFVYYVSMTGITGSALPDTSLIAGAVARIKAHTSLPVCVGFGVKTADHARAI-GATADGVVVGTAIVNQIASSLTEE 248
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_ECOSM1.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECOL61.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECOL51.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECOK11.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECO811.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECO7I1.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECO451.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECO271.144e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_AGRRK1.144e-1138.46Tryptophan synthase alpha chain OS=Agrobacterium r... [more]
TRPA_SINMW1.494e-1134.65Tryptophan synthase alpha chain OS=Sinorhizobium m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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