BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CHLSY (Tryptophan synthase alpha chain OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.262e-18
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 2
Query:   50 RLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            +L L++F  PTTP  R+  I   + GF+Y+VS  GVTGAR +++G++  L+  +++ +  P+ VGFGIS+P H+ +VA   ADG IVGSA++  L E   PE+ +     + + L SA+
Sbjct:  147 QLDLIMFIAPTTPPARISQITAQASGFLYIVSLTGVTGARQTLAGNLTDLIANVRQQTNLPLVVGFGISQPAHIAEVARI-ADGAIVGSALIDRL-ERLPPEDRVSGAAAYIRELLSAV 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CHLAA (Tryptophan synthase alpha chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.262e-18
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 2
Query:   50 RLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            +L L++F  PTTP  R+  I   + GF+Y+VS  GVTGAR +++G++  L+  +++ +  P+ VGFGIS+P H+ +VA   ADG IVGSA++  L E   PE+ +     + + L SA+
Sbjct:  147 QLDLIMFIAPTTPPARISQITAQASGFLYIVSLTGVTGARQTLAGNLTDLIANVRQQTNLPLVVGFGISQPAHIAEVARI-ADGAIVGSALIDRL-ERLPPEDRVSGAAAYIRELLSAV 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METM6 (Tryptophan synthase alpha chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.648e-18
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            YR    K  +  V    P TP DR+K   EAS  F+YL+S+ G+TGAR S        ++  + +    + VGFGISK  H + +   GADGVIVGSA V ++      EE L +LE+ AK L   +
Sbjct:  124 YREICKKHEMGTVFLAAPNTPEDRLKTSDEASTEFLYLISTFGITGARESFEQMTFDFIKRARTTCKGKICVGFGISKGSHAESLIEQGADGVIVGSAFVDIIKNYGDSEEALVKLEELAKELSEGI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METAC (Tryptophan synthase alpha chain OS=Methanosarcina acetivorans GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.648e-18
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            K  L L+    PTT   R++ I+E   GF+YLVS +GVTGARA +SG  + LL  +K  +  P AVGFGIS  +   +V   GAD VIVGS  V+++ E     E   +LE  A+ LKS +
Sbjct:  153 KYGLDLIFLVAPTTTDARIRKILERGSGFIYLVSRLGVTGARADVSGSTKELLSRVK--TDIPKAVGFGISTGKQAAEVRKAGADAVIVGSVFVRIIEEGNGVNE---KLEALARELKSGI 268          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PYRAB (Tryptophan synthase alpha chain OS=Pyrococcus abyssi GN=trpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKE 370
            +  V    P TP +R+K I +AS GFVYL+S  G TGAR  I      LL+  K      VAVGFG+SK EHV+ +   GA+GV+VGSA++ ++ E  ++ EE L+E
Sbjct:  134 IKTVFLAAPNTPDERLKEIDKASTGFVYLISLYGTTGARDKIPETAFNLLKRAKRICKNKVAVGFGVSKREHVEMLLNAGANGVVVGSALINIIAEHGENAEEKLRE 240          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METKA (Tryptophan synthase alpha chain OS=Methanopyrus kandleri GN=trpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   47 IRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            + + ++    P+T  +R+K I E + GFVY++S  GVTGAR  +S     L+R +++    PVAVGFGIS+  HV++V   GADG IVGSA +K +  ++   E  + + + AK L
Sbjct:  145 LEIDVIYLVAPSTTDERLKKIGERASGFVYVISRYGVTGARRDLSEDTLELVRWVRDHVDVPVAVGFGISERWHVEEVIAAGADGAIVGSAFIKEIHRSEDIAEAEERVRELAKEL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSL (Tryptophan synthase alpha chain OS=Geobacter sulfurreducens GN=trpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L ++   TPT+   R++ +   + GFVY VS  GVTGAR+ +   V + +  I+E+ T PV VGFGIS P+   QVA   ADGV+VGSA+VKL     + E G +E+  F  +L+ A+
Sbjct:  147 LDVIFLLTPTSDEGRIRKVARQARGFVYYVSVTGVTGARSGVEASVSSNVAAIREAITVPVVVGFGISTPDQAAQVAA-SADGVVVGSAIVKLFERFTAAELG-REVATFVSALREAI 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METM5 (Tryptophan synthase alpha chain OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=trpA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.672e-18
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            YR    K  +  V    P TP +R+K   EAS  F+YL+S+ G+TGAR +        ++  + +    + VGFGISK  H + +   GADGVIVGSA V ++      EE L +LE+FAK L   +
Sbjct:  124 YREICKKHEMGTVFLAAPNTPEERLKISDEASTEFLYLISTFGITGARDTFEQMTFDFIKRARTTCKGKICVGFGISKGSHAESLIEQGADGVIVGSAFVDIIKNYGDSEEALVKLEEFAKELSEGI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CHLAD (Tryptophan synthase alpha chain OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=trpA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.672e-18
Identity = 49/117 (41.88%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L L++F  PTTP  R+  IV  + GF+Y+VS  GVTGAR +++ ++  L+  +++ +  P+ VGFGIS+P HV +VA   ADG IVGSA++  L E  +P E +     + + L SA
Sbjct:  148 LDLIMFIAPTTPPTRITQIVAHASGFLYIVSLTGVTGARQTLAANLADLITTVRQQTDLPLVVGFGISQPSHVAEVARL-ADGAIVGSALIDRL-ERLAPSERVSGATAYIRELVSA 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEMY (Tryptophan synthase alpha chain OS=Pseudomonas mendocina (strain ymp) GN=trpA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.796e-18
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 364
            L  +  TTPTT  DR+  ++  S GFVY VS  GVTGA A+   HV+  +  ++  +  PV +GFGI  PEH  +VA   A+G +VGSA++  + EA+SP++ +
Sbjct:  148 LDFIRLTTPTTDDDRLPTVLAGSSGFVYYVSVAGVTGAGAATLDHVEEAVARLRRHTDLPVCIGFGIRTPEHAAEVAK-RAEGAVVGSALIDKIAEAKSPQQAI 250          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_CHLSY1.262e-1840.34Tryptophan synthase alpha chain OS=Chloroflexus au... [more]
TRPA_CHLAA1.262e-1840.34Tryptophan synthase alpha chain OS=Chloroflexus au... [more]
TRPA_METM61.648e-1839.37Tryptophan synthase alpha chain OS=Methanococcus m... [more]
TRPA_METAC1.648e-1843.80Tryptophan synthase alpha chain OS=Methanosarcina ... [more]
TRPA_PYRAB2.811e-1844.86Tryptophan synthase alpha chain OS=Pyrococcus abys... [more]
TRPA_METKA2.811e-1839.66Tryptophan synthase alpha chain OS=Methanopyrus ka... [more]
TRPA_GEOSL2.811e-1842.37Tryptophan synthase alpha chain OS=Geobacter sulfu... [more]
TRPA_METM53.672e-1838.58Tryptophan synthase alpha chain OS=Methanococcus m... [more]
TRPA_CHLAD3.672e-1841.88Tryptophan synthase alpha chain OS=Chloroflexus ag... [more]
TRPA_PSEMY4.796e-1842.31Tryptophan synthase alpha chain OS=Pseudomonas men... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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