BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECOLC (Tryptophan synthase alpha chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECOHS (Tryptophan synthase alpha chain OS=Escherichia coli O9:H4 (strain HS) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECODH (Tryptophan synthase alpha chain OS=Escherichia coli (strain K12 / DH10B) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECOBW (Tryptophan synthase alpha chain OS=Escherichia coli (strain K12 / BW2952) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO8A (Tryptophan synthase alpha chain OS=Escherichia coli O8 (strain IAI1) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACFR (Tryptophan synthase alpha chain OS=Bacteroides fragilis GN=trpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 376
            + +++  TP T  +R++ I E ++GF+Y+VSS   TGA+    G  +   ++I++ + + P  VGFGIS  E   + A   A G I+GS  V LL E ++PE+ +  L+
Sbjct:  145 VKVIMLITPETSEERVREIDEHTDGFIYMVSSAATTGAQQDFDGQKRAYFKKIEKMNLRNPRMVGFGISN-EATFRAACENASGAIIGSRFVTLLHEEKNPEKAITRLK 252          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACFN (Tryptophan synthase alpha chain OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELE 376
            + +++  TP T  +R++ I E ++GF+Y+VSS   TGA+    G  +   ++I++ + + P  VGFGIS  E   + A   A G I+GS  V LL E ++PE+ +  L+
Sbjct:  145 VKVIMLITPETSEERVREIDEHTDGFIYMVSSAATTGAQQDFDGQKRAYFKKIEKMNLRNPRMVGFGISN-EATFRAACENASGAIIGSRFVTLLHEEKNPEKAITRLK 252          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SHIF8 (Tryptophan synthase alpha chain OS=Shigella flexneri serotype 5b (strain 8401) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  151 IFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SALTO (Tryptophan synthase alpha chain OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L      +P++   R+   VE   GFVY  + +GVTGARA  S     L+  ++  +  PV VG GI   E     + + ADGVIVGSA+++ L +A +   GL  L + +  L + +
Sbjct:  146 LDRTFLVSPSSTDARLHMTVEQCRGFVYATTIMGVTGARAQASAAAPVLVSRVRAVTDLPVGVGLGIGTGEQASTASSF-ADGVIVGSALIRRLLDAPNLPAGLTALRELSAELAAGV 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SALAI (Tryptophan synthase alpha chain OS=Salinispora arenicola (strain CNS-205) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L       P++   R++  VE   GFVY  + +GVTGAR   S     L+  ++  +  PV VG G         VAG+ ADGVIVGSA+++ L +A S   GL  L   +  L + +
Sbjct:  146 LDRTFLVAPSSTDTRLEMTVEHCRGFVYATALMGVTGARTQASAAAPVLVSRVRGVTDLPVGVGLGTGTGAQASTVAGF-ADGVIVGSALIRCLLDAPSLPAGLTALRALSAELAAGV 262          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_ECOLC1.494e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECOHS1.494e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECODH1.494e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECOBW1.494e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECO8A1.494e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_BACFR1.494e-1134.86Tryptophan synthase alpha chain OS=Bacteroides fra... [more]
TRPA_BACFN1.494e-1134.86Tryptophan synthase alpha chain OS=Bacteroides fra... [more]
TRPA_SHIF81.952e-1133.91Tryptophan synthase alpha chain OS=Shigella flexne... [more]
TRPA_SALTO1.952e-1133.90Tryptophan synthase alpha chain OS=Salinispora tro... [more]
TRPA_SALAI1.952e-1134.75Tryptophan synthase alpha chain OS=Salinispora are... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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