BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOFD (Tryptophan synthase alpha chain OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L L+    PT+  +RM+ +   + G+VY VS  GVTG+ A  +G V+ +L  I+     PV VGFGI +     +  G  AD V++GS +++L+ E    + G    +KF   +++AL
Sbjct:  156 LDLIFLLAPTSTDERMQQVARVASGYVYYVSLKGVTGSGALDTGAVEAMLPRIRAHVQVPVGVGFGI-RDAATARTIGQVADAVVIGSKIIQLIDEQPRDQVG-PVAQKFLCEIRTAL 271          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHIEC (Tryptophan synthase alpha chain OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 325
            ++ +   TPTT   R+  +++ + GFVY VS  G+TG+       V   ++ IK+ +  PV VGFG+   EH  +V G  ADGV+VG+A+V
Sbjct:  149 INFIRLATPTTDEKRLPTVLKNTSGFVYYVSMNGITGSALPDPSLVSGAVQRIKQHTELPVCVGFGVKTAEHA-KVIGGSADGVVVGTAIV 238          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PHOPR (Tryptophan synthase alpha chain OS=Photobacterium profundum GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 2
Query:   65 LFTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLKSA 403
            +F  P   TD  +K++ E   G+ YL+S  GVTGA       ++ L+  + + +  P  +GFGIS+P  V++    GA G I GSA+VK++    S     L  L +F + +K+A
Sbjct:  151 IFIAPPNATDETLKSVSELGGGYTYLLSRAGVTGAETKAGKPIRHLVESLTKHNAPPALLGFGISEPAQVKEAIEAGAAGAISGSAVVKIIENNLSDHTAMLDNLGQFIRDMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO55 (Tryptophan synthase alpha chain OS=Escherichia coli (strain 55989 / EAEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLVALKVFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_DEIRA (Tryptophan synthase alpha chain OS=Deinococcus radiodurans GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 325
            L++     PT+  +R+K + EA  GF+Y VS  GVTGAR   + G V  +L   ++ + +PV VGFG+      QQVA   ADGV+VGSA +
Sbjct:  158 LAVTFLIAPTSTPERVKLVAEACTGFLYAVSVTGVTGAREGAALGEVPRMLDLARQYAQRPVVVGFGVKDAATAQQVA-QVADGVVVGSAFI 248          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ACTSZ (Tryptophan synthase alpha chain OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 39/116 (33.62%), Postives = 62/116 (53.45%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGAR-ASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            V    P      +  +   +EG+ YLVS  GVT A   S + ++ TL+  +K  +  P+  GFGI++PE V+Q    G  G I GSA VK++ +   +    L+EL +F + +K+A
Sbjct:  151 VFICPPNADEKTVAGVASHTEGYTYLVSRAGVTSAENQSHAANLDTLVERLKAHNAAPILQGFGIARPEQVKQALTLGTSGAISGSATVKIIEKNLDNHPACLQELARFTREMKAA 266          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHIME (Tryptophan synthase alpha chain OS=Rhizobium meliloti GN=trpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPE 355
            +S +   TPTT   R+  ++E + GFVY VS  G+TG+       +   +  IK  +  PV VGFG+   +H + + G  ADGV+VG+A+V  +  + + E
Sbjct:  149 ISFIRLATPTTDDRRLPKVLENTSGFVYYVSMTGITGSALPDPSLIAGAVARIKAHTPLPVCVGFGVKTADHARAI-GASADGVVVGTAIVNQIASSLTEE 248          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_OCEIH (Tryptophan synthase alpha chain OS=Oceanobacillus iheyensis GN=trpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 373
            ++ +     T+  DR++ I + SEGF+Y VS  G TG RA         L ++K+ S  PV  GFGIS  E  ++++    DGV+VGS +V+L    Q  E+G+  L
Sbjct:  149 IAFIRLAAMTSTEDRLERIAKRSEGFLYAVSVTGTTGERAQHENDAFHFLEKLKQISHVPVLAGFGISTAERARELSA-ACDGVVVGSKIVQLF--EQGDEDGIHSL 252          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_HALHL (Tryptophan synthase alpha chain OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+    P T  +R++ +   + GFVY V+  GVTG+    +G V   +  I+  +  PVAVGFG+  P+    +A   ADGVIVGSA+V+++GE  +  +  + L     +L+ A+
Sbjct:  148 VDLIYLVAPNTSAERVERVCSVAGGFVYAVALKGVTGSADLDAGLVGQQVAGIRRVTDLPVAVGFGVRDPQSAAALAPC-ADGVIVGSALVRMIGEHGAAADLPERLRDAVLALRRAM 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO24 (Tryptophan synthase alpha chain OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAPIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAA 265          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_RHOFD1.952e-1133.90Tryptophan synthase alpha chain OS=Rhodoferax ferr... [more]
TRPA_RHIEC1.952e-1138.46Tryptophan synthase alpha chain OS=Rhizobium etli ... [more]
TRPA_PHOPR1.952e-1133.91Tryptophan synthase alpha chain OS=Photobacterium ... [more]
TRPA_ECO551.952e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_DEIRA1.952e-1142.39Tryptophan synthase alpha chain OS=Deinococcus rad... [more]
TRPA_ACTSZ1.952e-1133.62Tryptophan synthase alpha chain OS=Actinobacillus ... [more]
TRPA_RHIME2.549e-1134.65Tryptophan synthase alpha chain OS=Rhizobium melil... [more]
TRPA_OCEIH2.549e-1136.45Tryptophan synthase alpha chain OS=Oceanobacillus ... [more]
TRPA_HALHL2.549e-1133.90Tryptophan synthase alpha chain OS=Halorhodospira ... [more]
TRPA_ECO242.549e-1131.50Tryptophan synthase alpha chain OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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