BQ623328
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ALISL (Tryptophan synthase alpha chain OS=Aliivibrio salmonicida (strain LFI1238) GN=trpA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11 Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 2 Query: 26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ-SPEEGLKELEKFAKSLKSA 403 +R K + + P+ + ++ + + G+ YL+S GVTGA V LL + + P +GFGIS+P V++ GA G I GSA VK++ + Q +P L L F ++K+A Sbjct: 139 FRTSAIKHNVHPIFIAPPSASDETLETVAKLGGGYTYLLSRAGVTGAETKAGMPVAQLLARLNQFDAPPAILGFGISEPAQVEEAIKAGAAGAISGSATVKIIEQHQDNPAALLDALTAFTSAMKAA 265
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SHISS (Tryptophan synthase alpha chain OS=Shigella sonnei (strain Ss046) GN=trpA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 2 Query: 26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403 +R+ + ++ + P D ++ I G+ YL+S GVTGA + + L+ ++KE + P GFGIS P+ V+ GA G I GSA+VK++ + PE+ L L+ F + +K A Sbjct: 139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISTPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKVA 265
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHILW (Tryptophan synthase alpha chain OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=trpA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 2 Query: 53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 325 ++ + TPTT R+ +++ + GFVY VS G+TG+ V + IK+ + PV VGFG+ EH +V G ADGV+VG+A+V Sbjct: 149 INFIRLATPTTDEKRLPKVLKNTSGFVYYVSMNGITGSALPDPSLVSGAVERIKQHTQLPVCVGFGVKTAEHA-KVIGGSADGVVVGTAIV 238
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHIL3 (Tryptophan synthase alpha chain OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=trpA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 2 Query: 53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 325 ++ + TPTT R+ +++ + GFVY VS G+TG+ V + IK+ + PV VGFG+ EH +V G ADGV+VG+A+V Sbjct: 149 INFIRLATPTTDEKRLPKVLKNTSGFVYYVSMNGITGSALPDPSLVSGAVERIKQHTKLPVCVGFGVKTAEHA-KVIGGSADGVVVGTAIV 238
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_OLICO (Tryptophan synthase alpha chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 2 Query: 44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 334 K ++ + TPTT R+ A++ + GFVY VS G+TGA A+ V + IK + PV VGFGI PE ++A +G +VGSA+V L Sbjct: 146 KAGVNFIRLATPTTDDKRLPAVLANTSGFVYYVSITGITGAAAADDKQVGEAVARIKRHTQLPVCVGFGIRTPEAAARIAR-HCEGAVVGSALVDAL 241
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO5E (Tryptophan synthase alpha chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=trpA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 2 Query: 26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403 +R+ + ++ + P D ++ I G+ YL+S GVTGA + + L+ ++KE + P GFGIS P+ V+ GA G I GSA+VK++ + P++ L L+ F + +K+A Sbjct: 139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPKKMLAALKAFVQPMKAA 265
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO57 (Tryptophan synthase alpha chain OS=Escherichia coli O157:H7 GN=trpA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 2 Query: 26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403 +R+ + ++ + P D ++ I G+ YL+S GVTGA + + L+ ++KE + P GFGIS P+ V+ GA G I GSA+VK++ + P++ L L+ F + +K+A Sbjct: 139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPKKMLAALKAFVQPMKAA 265
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XYLFT (Tryptophan synthase alpha chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=trpA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 2 Query: 53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406 L+L++ +PTT R+ + ++G++Y VS GVTGA + LR ++ + PV VGFGI + V ADGV+VGSA+V L +A + + + F L+ AL Sbjct: 148 LALIVLASPTTSASRLATLSGVAQGYLYYVSFAGVTGADRLDAQSAGDRLRGLRAQTQVPVVVGFGI-RDAASAVVMAVDADGVVVGSALVTALSDAPDVDTACRRADAFLAPLRQAL 264
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XYLFM (Tryptophan synthase alpha chain OS=Xylella fastidiosa (strain M12) GN=trpA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 2 Query: 53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406 L+L++ +PTT R+ + ++G++Y VS GVTGA + LR ++ + PV VGFGI + V ADGV+VGSA+V L +A + + + F L+ AL Sbjct: 148 LALIVLASPTTSASRLATLSGVAQGYLYYVSFAGVTGADRLDAQSAGDRLRGLRAQTQVPVVVGFGI-RDAASAVVMAVDADGVVVGSALVTALSDAPDVDTACRRADAFLAPLRQAL 264
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XYLF2 (Tryptophan synthase alpha chain OS=Xylella fastidiosa (strain M23) GN=trpA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 2 Query: 53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406 L+L++ +PTT R+ + ++G++Y VS GVTGA + LR ++ + PV VGFGI + V ADGV+VGSA+V L +A + + + F L+ AL Sbjct: 148 LALIVLASPTTSASRLATLSGVAQGYLYYVSFAGVTGADRLDAQSAGDRLRGLRAQTQVPVVVGFGI-RDAASAVVMAVDADGVVVGSALVTALSDAPDVDTACRRADAFLAPLRQAL 264 The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 363
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bpback to top |