BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ALISL (Tryptophan synthase alpha chain OS=Aliivibrio salmonicida (strain LFI1238) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQ-SPEEGLKELEKFAKSLKSA 403
            +R    K  +  +    P+   + ++ + +   G+ YL+S  GVTGA       V  LL  + +    P  +GFGIS+P  V++    GA G I GSA VK++ + Q +P   L  L  F  ++K+A
Sbjct:  139 FRTSAIKHNVHPIFIAPPSASDETLETVAKLGGGYTYLLSRAGVTGAETKAGMPVAQLLARLNQFDAPPAILGFGISEPAQVEEAIKAGAAGAISGSATVKIIEQHQDNPAALLDALTAFTSAMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SHISS (Tryptophan synthase alpha chain OS=Shigella sonnei (strain Ss046) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    PE+ L  L+ F + +K A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISTPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKVA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHILW (Tryptophan synthase alpha chain OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 325
            ++ +   TPTT   R+  +++ + GFVY VS  G+TG+       V   +  IK+ +  PV VGFG+   EH  +V G  ADGV+VG+A+V
Sbjct:  149 INFIRLATPTTDEKRLPKVLKNTSGFVYYVSMNGITGSALPDPSLVSGAVERIKQHTQLPVCVGFGVKTAEHA-KVIGGSADGVVVGTAIV 238          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHIL3 (Tryptophan synthase alpha chain OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV 325
            ++ +   TPTT   R+  +++ + GFVY VS  G+TG+       V   +  IK+ +  PV VGFG+   EH  +V G  ADGV+VG+A+V
Sbjct:  149 INFIRLATPTTDEKRLPKVLKNTSGFVYYVSMNGITGSALPDPSLVSGAVERIKQHTKLPVCVGFGVKTAEHA-KVIGGSADGVVVGTAIV 238          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_OLICO (Tryptophan synthase alpha chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL 334
            K  ++ +   TPTT   R+ A++  + GFVY VS  G+TGA A+    V   +  IK  +  PV VGFGI  PE   ++A    +G +VGSA+V  L
Sbjct:  146 KAGVNFIRLATPTTDDKRLPAVLANTSGFVYYVSITGITGAAAADDKQVGEAVARIKRHTQLPVCVGFGIRTPEAAARIAR-HCEGAVVGSALVDAL 241          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO5E (Tryptophan synthase alpha chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    P++ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPKKMLAALKAFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ECO57 (Tryptophan synthase alpha chain OS=Escherichia coli O157:H7 GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            +R+   +  ++ +    P    D ++ I     G+ YL+S  GVTGA    +  +  L+ ++KE +  P   GFGIS P+ V+     GA G I GSA+VK++ +    P++ L  L+ F + +K+A
Sbjct:  139 FRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPKKMLAALKAFVQPMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XYLFT (Tryptophan synthase alpha chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L+L++  +PTT   R+  +   ++G++Y VS  GVTGA    +      LR ++  +  PV VGFGI +      V    ADGV+VGSA+V  L +A   +   +  + F   L+ AL
Sbjct:  148 LALIVLASPTTSASRLATLSGVAQGYLYYVSFAGVTGADRLDAQSAGDRLRGLRAQTQVPVVVGFGI-RDAASAVVMAVDADGVVVGSALVTALSDAPDVDTACRRADAFLAPLRQAL 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XYLFM (Tryptophan synthase alpha chain OS=Xylella fastidiosa (strain M12) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L+L++  +PTT   R+  +   ++G++Y VS  GVTGA    +      LR ++  +  PV VGFGI +      V    ADGV+VGSA+V  L +A   +   +  + F   L+ AL
Sbjct:  148 LALIVLASPTTSASRLATLSGVAQGYLYYVSFAGVTGADRLDAQSAGDRLRGLRAQTQVPVVVGFGI-RDAASAVVMAVDADGVVVGSALVTALSDAPDVDTACRRADAFLAPLRQAL 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_XYLF2 (Tryptophan synthase alpha chain OS=Xylella fastidiosa (strain M23) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L+L++  +PTT   R+  +   ++G++Y VS  GVTGA    +      LR ++  +  PV VGFGI +      V    ADGV+VGSA+V  L +A   +   +  + F   L+ AL
Sbjct:  148 LALIVLASPTTSASRLATLSGVAQGYLYYVSFAGVTGADRLDAQSAGDRLRGLRAQTQVPVVVGFGI-RDAASAVVMAVDADGVVVGSALVTALSDAPDVDTACRRADAFLAPLRQAL 264          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_ALISL2.549e-1130.71Tryptophan synthase alpha chain OS=Aliivibrio salm... [more]
TRPA_SHISS3.329e-1131.50Tryptophan synthase alpha chain OS=Shigella sonnei... [more]
TRPA_RHILW3.329e-1138.46Tryptophan synthase alpha chain OS=Rhizobium legum... [more]
TRPA_RHIL33.329e-1138.46Tryptophan synthase alpha chain OS=Rhizobium legum... [more]
TRPA_OLICO3.329e-1139.18Tryptophan synthase alpha chain OS=Oligotropha car... [more]
TRPA_ECO5E3.329e-1130.71Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_ECO573.329e-1130.71Tryptophan synthase alpha chain OS=Escherichia col... [more]
TRPA_XYLFT4.348e-1133.90Tryptophan synthase alpha chain OS=Xylella fastidi... [more]
TRPA_XYLFM4.348e-1133.90Tryptophan synthase alpha chain OS=Xylella fastidi... [more]
TRPA_XYLF24.348e-1133.90Tryptophan synthase alpha chain OS=Xylella fastidi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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