BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MARAV (Tryptophan synthase alpha chain OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK 367
            L  V    PTT  +R+KAI E S G+VY VS  GVTG+       V   +  + E +  PV VGFGI   E    V G  +DGVIVGS +V  +   Q+  + L+
Sbjct:  148 LDPVFLLAPTTTDERIKAISEHSSGYVYYVSIKGVTGSATIDVDEVAKKVAHVHELTALPVGVGFGIRDAETAAAV-GRVSDGVIVGSVLVDTIARHQTDPDALR 251          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_DICT6 (Tryptophan synthase alpha chain OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEK 379
            L L+LF +PTT  +R++ I++ +  F+Y +S  GVTG R  +       +  +K+ + KP+  GFG+     +  + G   DGVIVGSA+ K L   +  ++   EL K
Sbjct:  143 LDLILFISPTTREERIRKILDIAPSFLYCISVKGVTGERDRLPEEGVAFISRVKKETNKPLVWGFGLGSSYQINSLKGL-VDGVIVGSAIGKRLLNNEDIQDYFDELYK 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_DIAST (Tryptophan synthase alpha chain OS=Diaphorobacter sp. (strain TPSY) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+    PT+  +RM+ +   + G+VY VS  GVTG+ A  +  V+ +L  I+E    PV VGFGI +     Q  G  AD V++GS +++L+ E Q  E+ +     F + ++ AL
Sbjct:  152 IDLIFLLAPTSTAERMQQVARVASGYVYYVSLKGVTGSGALDTAAVEAMLPRIREHVKIPVGVGFGI-RDAATAQAIGRVADAVVIGSRIIQLI-EDQPHEKVVGITVDFLRGVRKAL 267          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_COREF (Tryptophan synthase alpha chain OS=Corynebacterium efficiens GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 2
Query:   65 LFTTPTTPTDR-MKAIVEASEGFVYLVSSIGVTGA-RASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-----GEAQSPE-----EGL-KELEKFAKSLKSA 403
            +F  P   ++  ++ +  AS+G++Y +S  GVTG  R S +  +  ++  IK     P+ +GFGIS P+HV      GA G I GSA+ K++     GE  +P      EGL KEL +F  ++K+A
Sbjct:  151 IFIAPAQASETTLEGVSAASKGYIYAISRDGVTGTERESSTTGLTDVVDNIKRFGGAPILLGFGISSPKHVADAIAAGAAGAITGSAITKIIASHCEGEHPNPSTITDPEGLRKELTEFISAMKAA 276          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BUCAT (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 35/119 (29.41%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLK 397
            K +++ +    P    D +  I   ++GF+Y++S  GVTG + +     +  + +IK+ ++ P+  GFGIS P+ +++    G  GVI GSA++ ++ +  + E+  +KE++KF   LK
Sbjct:  145 KYKINPIFICPPDADADFLYKISLYAQGFIYVLSRPGVTGIKNNTIALPRDFINKIKKYNSVPLLQGFGISNPKQIKEAISSGLSGVICGSAIINIIEKYLNQEKKMIKEIKKFTHLLK 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BUCAI (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 35/119 (29.41%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLK 397
            K +++ +    P    D +  I   ++GF+Y++S  GVTG + +     +  + +IK+ ++ P+  GFGIS P+ +++    G  GVI GSA++ ++ +  + E+  +KE++KF   LK
Sbjct:  145 KYKINPIFICPPDADADFLYKISLYAQGFIYVLSRPGVTGIKNNTIALPRDFINKIKKYNSVPLLQGFGISNPKQIKEAISSGLSGVICGSAIINIIEKYLNQEKKMIKEIKKFTHLLK 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BUCA5 (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 35/119 (29.41%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKELEKFAKSLK 397
            K +++ +    P    D +  I   ++GF+Y++S  GVTG + +     +  + +IK+ ++ P+  GFGIS P+ +++    G  GVI GSA++ ++ +  + E+  +KE++KF   LK
Sbjct:  145 KYKINPIFICPPDADADFLYKISLYAQGFIYVLSRPGVTGIKNNTIALPRDFINKIKKYNSVPLLQGFGISNPKQIKEAISSGLSGVICGSAIINIIEKYLNQEKKMIKEIKKFTHLLK 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_AZOPC (Tryptophan synthase alpha chain OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTK-PVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 373
            L +++  +P T  +R++ I    EGF+Y+VSS   TG + S     Q   R I     + P  +GFGIS  E +  VA   A GVI+GS  V LL E  +P++ +++L
Sbjct:  145 LKMIMLISPKTSEERIRLIDSNVEGFIYMVSSAATTGIQESFDEQKQEYFRRINSMKLRNPRLIGFGISNKETL-TVALENASGVIIGSKFVSLLAEENNPKKAVQKL 251          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ACISJ (Tryptophan synthase alpha chain OS=Acidovorax sp. (strain JS42) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + L+    PT+  +RM+ +   + G+VY VS  GVTG+ A  +  V+ +L  I+E    PV VGFGI +     Q  G  AD V++GS +++L+ E Q  E+ +     F + ++ AL
Sbjct:  152 IDLIFLLAPTSTPERMQQVARVASGYVYYVSLKGVTGSGALDTAAVEAMLPRIREHVKVPVGVGFGI-RDAATAQAIGRVADAVVIGSRIIQLI-EDQPHEKVVGITVDFLRGVRKAL 267          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRP_SCHPO (Tryptophan synthase OS=Schizosaccharomyces pombe GN=trp2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREI-----KESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSALP 409
            +R +  K  +S V    P+T   RM+ +   ++ F+Y+VS +G TG  +S +G + T L ++     K +   P+AVGFG++  EH  QV G  +DGV+VGS ++ L+ +A+ P      +E++ K L    P
Sbjct:  140 FREECKKQGVSFVPLVAPSTTDRRMELLASVADSFIYVVSRMGSTG--SSATGVINTALPQLCQRVRKFAGDTPLAVGFGVNTSEHFHQV-GSVSDGVVVGSKIIDLILKAE-PGTAATVVEEYCKYLTKEDP 268          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_MARAV7.416e-1140.00Tryptophan synthase alpha chain OS=Marinobacter aq... [more]
TRPA_DICT67.416e-1133.94Tryptophan synthase alpha chain OS=Dictyoglomus th... [more]
TRPA_DIAST7.416e-1133.90Tryptophan synthase alpha chain OS=Diaphorobacter ... [more]
TRPA_COREF7.416e-1134.92Tryptophan synthase alpha chain OS=Corynebacterium... [more]
TRPA_BUCAT7.416e-1129.41Tryptophan synthase alpha chain OS=Buchnera aphidi... [more]
TRPA_BUCAI7.416e-1129.41Tryptophan synthase alpha chain OS=Buchnera aphidi... [more]
TRPA_BUCA57.416e-1129.41Tryptophan synthase alpha chain OS=Buchnera aphidi... [more]
TRPA_AZOPC7.416e-1136.11Tryptophan synthase alpha chain OS=Azobacteroides ... [more]
TRPA_ACISJ7.416e-1133.90Tryptophan synthase alpha chain OS=Acidovorax sp. ... [more]
TRP_SCHPO9.685e-1133.08Tryptophan synthase OS=Schizosaccharomyces pombe G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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