BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRP_COPCI (Tryptophan synthase OS=Coprinopsis cinerea GN=TRP-1 PE=3 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQ--TLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIV-GSAMV---KLLGEAQSPE 355
            +R+K     LS V    P+T   R++ +   ++ F+Y+VS +G TG+ A+++ + +  T+L  I+E +  P+AV FG++  +    VA  GADGV+V GS +V   K  GE Q P+
Sbjct:  139 FRQKCAASNLSYVPLIAPSTTLKRIQFLASIADSFIYVVSKMGTTGSSANVAVNEELPTILSRIREYTHVPLAVEFGVATRDQFNYVADAGADGVVVIGSRIVNAIKAAGEGQVPQ 254          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_YERE8 (Tryptophan synthase alpha chain OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=trpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            +    P    D ++ I     G+ YL+S  GVTGA       +  L+ ++ E +  P   GFGIS+PE V+     GA G I GSA+VK++      P E L +L  F  ++K+A
Sbjct:  151 IFICPPNADDDLLREIASHGRGYTYLLSRAGVTGAENHGQLPLNHLIDKLCEYNAAPALQGFGISEPEQVKISLAAGAAGAISGSAIVKIIENNVSQPAEMLAQLANFVTNMKAA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BEII9 (Tryptophan synthase alpha chain OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=trpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 42/119 (35.29%), Postives = 62/119 (52.10%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-----GEAQSPEEGLKELEKFAKSL 394
            L+ +   TPTT   R+ A++  + GF+Y VS  G+TGA       V + +  IK  +  PVAVGFG+   E  + +A   AD V+VGSA+V  L     GE ++    +  +EK    L
Sbjct:  149 LNFIRLATPTTDAVRLPAVLANTSGFLYYVSITGITGAGVPDYSKVASAVAGIKAHTNLPVAVGFGVKTAESARTIA-CHADAVVVGSAIVDALRASLDGEGRATPACIGTVEKLVAEL 266          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRP_COPCI9.685e-1135.34Tryptophan synthase OS=Coprinopsis cinerea GN=TRP-... [more]
TRPA_YERE89.685e-1133.91Tryptophan synthase alpha chain OS=Yersinia entero... [more]
TRPA_BEII99.685e-1135.29Tryptophan synthase alpha chain OS=Beijerinckia in... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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