BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METBF (Tryptophan synthase alpha chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=trpA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.796e-18
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L L+    PTT   R++ I+E   GF+YLVS +GVTGAR  +S   + LL  ++  +  P AVGFGIS  E   +V   GAD VIVGSA VK++ E +   E    LE  AK LKS +
Sbjct:  147 LDLIFLIAPTTTEGRVQKILERGSGFLYLVSRLGVTGAREDVSSSTRELLSRVE--TGLPKAVGFGISTGEQAAEVRDAGADAVIVGSAFVKIIDEGKDVNE---RLEALAKELKSGI 259          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYMTH (Tryptophan synthase alpha chain OS=Symbiobacterium thermophilum GN=trpA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.263e-18
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 2
Query:   47 IRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKS 400
            + L L+ F  PT+P +R++   E + GF+Y VSS GVTG R  +   +  ++  +K  +  PVAVGFGIS+PE V+QV    AD  IVGSA V+  GE     E ++ +   A+ LK+
Sbjct:  146 VGLDLIQFVAPTSPPERIRRAAELARGFIYAVSSTGVTGVRDRLPPQLTAMVEAVKAVTDTPVAVGFGISRPEQVRQVTA-VADAAIVGSAFVRHCGEGLPEHELVERVRILAEELKA 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PYRFU (Tryptophan synthase alpha chain OS=Pyrococcus furiosus GN=trpA PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.263e-18
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE 340
            +  V    P TP +R+K I + + GFVYLVS  G TGAR  I      LLR  K      VAVGFG+SK EHV  +   GA+GV+VGSA+VK++GE
Sbjct:  134 IKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METM7 (Tryptophan synthase alpha chain OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=trpA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.263e-18
Identity = 49/127 (38.58%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            YR    K  +  V    P TP +R+K   EAS  F+YL+S+ G+TGAR S        ++  + +    + VGFGISK  H + +   GADGVIVGSA V ++      EE L +LE+ AK L   +
Sbjct:  124 YREICKKHEMGTVFLAAPNTPEERLKISDEASTEFLYLISTFGITGARESFEQMTFDFIKRARTTCKGKICVGFGISKGSHAESLIEQGADGVIVGSAFVDIIKNYGDSEEALVKLEELAKELSEGI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METMA (Tryptophan synthase alpha chain OS=Methanosarcina mazei GN=trpA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.180e-18
Identity = 51/118 (43.22%), Postives = 70/118 (59.32%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L L+    PTT   R++ I++   GF+YLVS +GVTGAR  ++G  + LL  +  ++  P AVGFGIS  E   +V   GADGVIVGSA V+++ E     E    LE  A+ LKS +
Sbjct:  155 LDLIFLVAPTTTEARIRKILQRGSGFIYLVSRLGVTGARDDVAGSTKELLSRV--NTDIPKAVGFGISTGEQAAEVRKAGADGVIVGSAFVRIIEEGTDVNE---RLETLARELKSGM 267          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METVS (Tryptophan synthase alpha chain OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=trpA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            YR+   K  +  V  + P TP +R+K   EAS  F+YL+S+ G+TGAR S        ++  +++    + VGFGISK  H + +   GADGVIVGSA V ++       E + +LE+ AK L + +
Sbjct:  124 YRKICKKHEMGTVFLSAPNTPEERLKMSDEASTEFLYLISTFGITGARESFEQMTFDFIKRARKTCKGKICVGFGISKGTHAESLIEQGADGVIVGSAFVDIIKTYGDSNEAITKLEELAKELHNGI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METB6 (Tryptophan synthase alpha chain OS=Methanoregula boonei (strain 6A8) GN=trpA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 403
            K  +  +   T TT  +RM  IV  + G++YLVS +GVTGAR +++     LL  ++  +  P+A+GFGIS PEHV      GADGVIVGSA+V ++ +   +P+   ++L ++   +K A
Sbjct:  142 KYGIDPIFLVTQTTSNERMDTIVRHARGYLYLVSVLGVTGARKTVAPEALALLNRVRSHTDLPLAIGFGISTPEHVTTCNLAGADGVIVGSAIVDIVEKNLGNPDAMEQDLRRYVSVMKKA 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACHD (Tryptophan synthase alpha chain OS=Bacillus halodurans GN=trpA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP-------EEGLKELEKFAKSLKSA 403
            LSL+    PT+   R++ I   ++GFVY VSS+GVTG R  +   V   L+ +K  ++ PV VGFGIS+ E V+ +A   ADGV+VGSA+VKL+GE +         E+GL ++++F   L S+
Sbjct:  144 LSLISLVAPTS-NKRIEKIAARAQGFVYCVSSLGVTGLRDELDPRVHEFLQTVKTHASVPVVVGFGISRREQVEALAE-NADGVVVGSAIVKLVGELEDELNDPEKLEDGLFKIKRFVSELISS 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SOLUE (Tryptophan synthase alpha chain OS=Solibacter usitatus (strain Ellin6076) GN=trpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLK 397
            L  V    PT+   R++ +   S GFVYLVS  GVTG R S+S  V  L++ ++ ++  P+AVGFGISKPEHV ++ G   + V+VGSA V+L+ +         +LE F + LK
Sbjct:  147 LDTVFLAAPTSTARRIELVARYSTGFVYLVSRTGVTGERESLSASVAPLIQAVRAATDLPLAVGFGISKPEHVAEL-GSQVEAVVVGSAFVRLIEQNAESAALEIQLESFTRELK 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PYRKO (Tryptophan synthase alpha chain OS=Pyrococcus kodakaraensis GN=trpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLK----ELEKFAKSL 394
            L  V    P TP +R++ I +AS GFVYL+S  G TGAR  +       +R  ++     +AVGFG+S+ E V+++   GADGV+VGSA+++L+  +++P E L+    EL  ++++L
Sbjct:  134 LKTVFLAAPNTPDERLREIDKASTGFVYLISLYGTTGARDRLPETAFEFVRRARKICNNKLAVGFGVSRREQVEELLKAGADGVVVGSALIELISRSENPVEELRRKVAELSGYSRAL 251          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_METBF4.796e-1844.92Tryptophan synthase alpha chain OS=Methanosarcina ... [more]
TRPA_SYMTH6.263e-1840.68Tryptophan synthase alpha chain OS=Symbiobacterium... [more]
TRPA_PYRFU6.263e-1848.96Tryptophan synthase alpha chain OS=Pyrococcus furi... [more]
TRPA_METM76.263e-1838.58Tryptophan synthase alpha chain OS=Methanococcus m... [more]
TRPA_METMA8.180e-1843.22Tryptophan synthase alpha chain OS=Methanosarcina ... [more]
TRPA_METVS1.395e-1737.01Tryptophan synthase alpha chain OS=Methanococcus v... [more]
TRPA_METB61.822e-1738.84Tryptophan synthase alpha chain OS=Methanoregula b... [more]
TRPA_BACHD1.822e-1741.94Tryptophan synthase alpha chain OS=Bacillus halodu... [more]
TRPA_SOLUE3.108e-1741.74Tryptophan synthase alpha chain OS=Solibacter usit... [more]
TRPA_PYRKO3.108e-1738.14Tryptophan synthase alpha chain OS=Pyrococcus koda... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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