BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_METMP (Tryptophan synthase alpha chain OS=Methanococcus maripaludis GN=trpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 2
Query:   26 YRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            YR+   K  +  V    P TP +R+K   EAS  F+YL+S+ G+TGAR +        ++  + +    + VGFGISK  H + +   GADGVIVGSA V ++      +E L +LE+ AK L   +
Sbjct:  124 YRKICKKHEMGTVFLAAPNTPEERLKISDEASTEFLYLISTFGITGARDTFEQMTFDFIKRARTTCKGKICVGFGISKGSHAESLIEQGADGVIVGSAFVDIIKNYGDSKEALVKLEELAKELSEGI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA2_CYACA (Tryptophan synthase alpha chain OS=Cyanidium caldarium GN=trpA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 42/117 (35.90%), Postives = 73/117 (62.39%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L ++   +PTTP  R K +  A + ++YLVS  GVTG  A     +  ++ E+K+ +T P+A+GFGI + + +Q V  WGADGVI+G+A +++L      E+G+ +L ++  ++K +
Sbjct:  128 LHMIWLISPTTPKVRAKQLALACDDWIYLVSRTGVTGVDAHFDNQIPNMIAELKQVTTTPIALGFGIHQKQQLQLVKSWGADGVIIGTACMQIL-----LEKGVDQLTEWISAMKKS 239          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PARDP (Tryptophan synthase alpha chain OS=Paracoccus denitrificans (strain Pd 1222) GN=trpA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L+ +   TPTT   R+ A+V  + GFVY VS  G+TG  A+ +  V   +  I+ ++  PV VGFGIS PE  Q VAG  ADG +VGSA+VKL+GE +   E L  +   A+   SA
Sbjct:  150 LNFIRLATPTTDDRRLPAVVRNTSGFVYYVSVTGITGGPAANAAEVAPEVARIRAAAKLPVVVGFGISTPEAAQAVAG-VADGCVVGSAIVKLIGEGRPVPEILSFVADLAQGAHSA 265          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOMG (Tryptophan synthase alpha chain OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=trpA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.302e-17
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + ++   TPT+   R++ +   + GF+Y VS  GVTG R+ I   V   +  IKE S  PVAVGFGI+ PE   +VA   ADGV+VGSA+VKL  E    EE    L  F  SLK A+
Sbjct:  147 IDVIFLLTPTSDETRIRTVTNRARGFIYYVSVTGVTGVRSGIEASVAGNVNIIKECSKVPVAVGFGIATPEQAGEVAA-TADGVVVGSAIVKLF-EKHRGEELKGALATFVSSLKQAV 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_STRAW (Tryptophan synthase alpha chain OS=Streptomyces avermitilis GN=trpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 2
Query:   23 LYRRKP*KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            L+R    K  L+ V    P++   R+  I  A  GFVY  S +GVTG RAS+    Q L+R  + ++  PV VG G+S      +VAG+ ADGVIVGSA VKL+ +A+    GL+ +   A  L
Sbjct:  147 LWREHAEKHGLATVFVVAPSSKDARLAEITAAGSGFVYAASLMGVTGTRASVGEQAQDLVRRTRATTDLPVCVGLGVSNATQAAEVAGF-ADGVIVGSAFVKLMLDAEDEAAGLEAVRALAGEL 269          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_THEPX (Tryptophan synthase alpha chain OS=Thermoanaerobacter sp. (strain X514) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            K  + L+    PT+  +R+K I E  +GFVY VS  GVTGAR  I   ++  ++ + + +  P A+GFGIS PE  +++  + +DG+IVGSA+V+ + +  +  E L+E++ F  SLK  L
Sbjct:  144 KYGIYLIPLVAPTSK-ERIKLITENGKGFVYCVSITGVTGAREDIETDIEEYMKTVSQYTNMPKAIGFGISTPEMAKKLKDF-SDGIIVGSALVERIAKGYNKSEMLQEVKSFVSSLKEVL 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSESM (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. tomato GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 364
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  ++ P++VGFGI  PE    +A   ADGV+VGSA V  +  A+SPE+ +
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTSLPISVGFGIRTPEQAAAIARL-ADGVVVGSAFVDKIATAESPEQAI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_NATPD (Tryptophan synthase alpha chain OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE----AQSPEEGLKELEKFAKSLKS 400
            L LV    PTT  DR++ ++E   G+VY+ + +GVTGAR  +S      L  + E+   P AVGFGIS  E  + V   GADGVIVGSA+V ++ E      +P+     LE  A+ LKS
Sbjct:  144 LDLVFIVAPTTAGDRLERMMEQVSGYVYVQARLGVTGAREDVSDRTAETLARL-EAYDVPKAVGFGISSGEQAEAVVAAGADGVIVGSALVDIVAEGHENGDAPDVVADRLESLARELKS 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS4 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L+ +   TPTT + R+  +++ + GFVY VS  G+TGA A+ +  V   +  IK ++  PV VGFGI+ PE  Q +AG  ADG +VGSA+VKL+GE +   E L  +   A    +A
Sbjct:  148 LNFIRLATPTTDSRRLPKVLQNTSGFVYYVSITGITGAAAAQAADVAPEVARIKAATDLPVIVGFGITTPEAAQDLAGI-ADGCVVGSAIVKLVGEGRPVAEVLDRVAALAAGAHAA 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS1 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L+ +   TPTT + R+  +++ + GFVY VS  G+TGA A+ +  V   +  IK ++  PV VGFGI+ PE  Q +AG  ADG +VGSA+VKL+GE +   E L  +   A    +A
Sbjct:  148 LNFIRLATPTTDSRRLPKVLQNTSGFVYYVSITGITGAAAAQAADVAPEVARIKAATDLPVIVGFGITTPEAAQDLAGI-ADGCVVGSAIVKLVGEGRPVAEVLDRVAALAAGAHAA 263          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_METMP3.108e-1737.01Tryptophan synthase alpha chain OS=Methanococcus m... [more]
TRPA2_CYACA3.108e-1735.90Tryptophan synthase alpha chain OS=Cyanidium calda... [more]
TRPA_PARDP4.060e-1743.59Tryptophan synthase alpha chain OS=Paracoccus deni... [more]
TRPA_GEOMG5.302e-1744.07Tryptophan synthase alpha chain OS=Geobacter metal... [more]
TRPA_STRAW1.181e-1640.32Tryptophan synthase alpha chain OS=Streptomyces av... [more]
TRPA_THEPX1.543e-1638.02Tryptophan synthase alpha chain OS=Thermoanaerobac... [more]
TRPA_PSESM1.543e-1641.35Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_NATPD1.543e-1641.67Tryptophan synthase alpha chain OS=Natronomonas ph... [more]
TRPA_RHOS42.015e-1641.03Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]
TRPA_RHOS12.015e-1641.03Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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