BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSE14 (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 364
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  ++ P++VGFGI  PE    +A   ADGV+VGSA V  +  A+SPE+ +
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTSLPISVGFGIRTPEQAAAIARL-ADGVVVGSAFVDKIATAESPEKAI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_LACCA (Tryptophan synthase alpha chain OS=Lactobacillus casei GN=trpA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 47/121 (38.84%), Postives = 77/121 (63.64%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            K  + ++   TPT+   R++ I +++ GF+Y+VSS+G+TG R      ++ L+ EIK+ +  P A+GFGI  PE  Q +AG  ADGVI+GSA+V L+  A+  ++    +EKF K ++ A+
Sbjct:  141 KYGIDIIPLITPTSG-HRIEKIAKSASGFIYVVSSMGITGERDEFFAGLKALVAEIKQYTNVPTAIGFGIHTPEQAQTMAGI-ADGVIIGSAIVDLV--AKEKQQAPAAIEKFTKQIRVAV 257          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACSU (Tryptophan synthase alpha chain OS=Bacillus subtilis GN=trpA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.685e-16
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   83 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-------AQSPEEGLKELEKFA 385
            T   R+K I+E +EGFVY VSS+GVTG R   +  V   +R +K  ST PVAVGFGIS  E V ++    +DGV+VGSA+V+ + E       A++  + L+E E +A
Sbjct:  151 TSESRLKTIIEQAEGFVYCVSSLGVTGVRNEFNSSVYPFIRTVKNLSTVPVAVGFGISNREQVIKM-NEISDGVVVGSALVRKIEELKDRLISAETRNQALQEFEDYA 257          

HSP 2 Score: 22.3274 bits (46), Expect = 2.685e-16
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 1
Query:    1 VPLEETESLQKEAMKNKI 54
            +PLEE+ SLQ+E   +++
Sbjct:  125 LPLEESNSLQEECKSHEV 142          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACNA (Tryptophan synthase alpha chain OS=Bacillus subtilis subsp. natto GN=trpA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.685e-16
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   83 TPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-------AQSPEEGLKELEKFA 385
            T   R+K I+E +EGFVY VSS+GVTG R   +  V   +R +K  ST PVAVGFGIS  E V ++    +DGV+VGSA+V+ + E       A++  + L+E E +A
Sbjct:  151 TSESRLKTIIEQAEGFVYCVSSLGVTGVRNEFNSSVYPFIRTVKNLSTVPVAVGFGISNREQVIKM-NEISDGVVVGSALVRKIEELKDRLISAETRNQALQEFEDYA 257          

HSP 2 Score: 22.3274 bits (46), Expect = 2.685e-16
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 1
Query:    1 VPLEETESLQKEAMKNKI 54
            +PLEE+ SLQ+E   +++
Sbjct:  125 LPLEESNSLQEECKSHEV 142          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYNAS (Tryptophan synthase alpha chain OS=Syntrophus aciditrophicus (strain SB) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L  +    PTT  +RM  I   ++GF+Y +S  GVTG       +V+  +R I+  S  P+ VGFGIS PE  +++A   ADG+++GSA V+L+ E     E    +  FA+ +K A+
Sbjct:  147 LDFITLIAPTTSEERMCRIARRAQGFIYYISITGVTGTATPSRDNVEREIRRIRTHSDLPLVVGFGISTPEQARELASL-ADGIVIGSAFVRLIAENADSPELAARVSSFAREIKKAM 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEU2 (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. syringae (strain B728a) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGL 364
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  +  P++VGFGI  PE    +A   ADGV+VGSA V  +  A+SPE  +
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAAAIARL-ADGVVVGSAFVDKIASAESPEHAI 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEAB (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 373
            L  +  TTPTT   R+  ++E S GFVY VS  GVTGA A+   HV+  +  ++  +  P+ +GFGI   EH   VA   ADGV+VGSA++  + +A+   + +K++
Sbjct:  148 LDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIAKARDNAQAVKDV 253          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEA8 (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain LESB58) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 373
            L  +  TTPTT   R+  ++E S GFVY VS  GVTGA A+   HV+  +  ++  +  P+ +GFGI   EH   VA   ADGV+VGSA++  + +A+   + +K++
Sbjct:  148 LDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIAKARDNAQAVKDV 253          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_LACPL (Tryptophan synthase alpha chain OS=Lactobacillus plantarum GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 47/118 (39.83%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            ++L+    PT+   R+ AI + + GF+Y+VSS+GVTG R  I+  + TL+ +I+ ++T PVA+GFGI +P   Q +A   ADGVIVGSA+V L+   Q     L++   + + ++ AL
Sbjct:  143 IALIPLIAPTSDDARIAAIAQQARGFIYVVSSLGVTGTRRHITTDLATLVAKIRHATTLPVAIGFGIHEPAQAQAMAQI-ADGVIVGSAVVHLIATHQPATAVLRD---YTRRMRRAL 256          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_DEHSC (Tryptophan synthase alpha chain OS=Dehalococcoides sp. (strain CBDB1) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 41/118 (34.75%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L ++    PT+  +R+K +   S GF+YLVS  GVTGA A++   + + +  +++++ +P+AVGFGIS PE  Q +A + +DG+IVGS +++L+      +  L+++  F + L+ +L
Sbjct:  142 LDIIFLLAPTSTDERIKLVAAKSRGFIYLVSHSGVTGATANLPADLSSFVNRVRKTARQPLAVGFGISTPEQAQNIAKF-SDGIIVGSRILQLV----QTDPSLEKVATFIRQLRQSL 254          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_PSE142.015e-1641.35Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_LACCA2.015e-1638.84Tryptophan synthase alpha chain OS=Lactobacillus c... [more]
TRPA_BACSU2.685e-1644.44Tryptophan synthase alpha chain OS=Bacillus subtil... [more]
TRPA_BACNA2.685e-1644.44Tryptophan synthase alpha chain OS=Bacillus subtil... [more]
TRPA_SYNAS3.437e-1636.44Tryptophan synthase alpha chain OS=Syntrophus acid... [more]
TRPA_PSEU23.437e-1641.35Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_PSEAB3.437e-1639.25Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_PSEA83.437e-1639.25Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_LACPL3.437e-1639.83Tryptophan synthase alpha chain OS=Lactobacillus p... [more]
TRPA_DEHSC3.437e-1634.75Tryptophan synthase alpha chain OS=Dehalococcoides... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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