BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_DEHSB (Tryptophan synthase alpha chain OS=Dehalococcoides sp. (strain BAV1) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 41/118 (34.75%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L ++    PT+  +R+K +   S GF+YLVS  GVTGA A++   + + +  +++++ +P+AVGFGIS PE  Q +A + +DG+IVGS +++L+      +  L+++  F + L+ +L
Sbjct:  142 LDIIFLLAPTSTDERIKLVAAKSRGFIYLVSHSGVTGATANLPADLSSFVNRVRKTARQPLAVGFGISTPEQAQNIAKF-SDGIIVGSRILQLV----QTDPSLEKVATFIRQLRQSL 254          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_DEHE1 (Tryptophan synthase alpha chain OS=Dehalococcoides ethenogenes (strain 195) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 41/118 (34.75%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L ++    PT+  +R+K +   S GF+YLVS  GVTGA A++   + + +  +++++ +P+AVGFGIS PE  Q +A + +DG+IVGS +++L+      +  L+++  F + L+ +L
Sbjct:  142 LDIIFLLAPTSTDERIKLVAAKSRGFIYLVSHSGVTGATANLPADLSSFVNRVRKTARQPLAVGFGISTPEQAQNIAKF-SDGIIVGSRILQLV----QTDPSLEKVATFIRQLRQSL 254          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_RHOSK (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L+ +   TPTT + R+  +++ + GFVY VS  G+TGA A+ +  V   +  IK ++  PV VGFGI+ PE  Q +AG  ADG +VGSA+VKL+GE +   E L  +   A    +A
Sbjct:  148 LNFIRLATPTTDSRRLPKVLQNTSGFVYYVSITGITGAAAAQAVDVAPEVARIKAATDLPVIVGFGITTPEAAQDLAGI-ADGCVVGSAIVKLVGEGRPVAEVLDRVAALAAGAHAA 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPG (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain GB-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  +  P++VGFGI  PE    +A   ADGV+VGSA+V  + +A+S ++ + ++     +L
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAANIARL-ADGVVVGSALVDKIAQAKSADQAVNDVLSLCSAL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_NOVAD (Tryptophan synthase alpha chain OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-LKEL 373
            +SL+   TPTT   R+ A++E S GF+Y VS  G+TG + +    ++  +  IK+S+T PVAVGFG+  PE    +A   ADGV+VGSA+V L+    +   G +KEL
Sbjct:  144 VSLIRLATPTTDAARLPAVLEGSSGFLYYVSVAGITGMQQAAQASIEEAVARIKQSATIPVAVGFGVRTPEQAAAIAK-VADGVVVGSALVDLVARHGADAAGPVKEL 250          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ERYLH (Tryptophan synthase alpha chain OS=Erythrobacter litoralis (strain HTCC2594) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            +   TPTT   R+ A++E  EGFVY VS  G+TG + +    +++ +  IK S+  PVAVGFG+  PE    +A   ADGV+VGSA+V+L+GE  +  E   +L++  K+L  A+
Sbjct:  144 IRLATPTTDAKRLPAVLEGCEGFVYYVSVAGITGKQQAALDTIESNVARIKRSTDLPVAVGFGVRTPEQAGAIAR-VADGVVVGSALVELVGEFGT--EAPAKLQELTKALADAV 255          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CYAME (Tryptophan synthase alpha chain OS=Cyanidioschyzon merolae GN=trpA PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 41/117 (35.04%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            L+++   +PTT   R + +  A + ++Y++S  GVTG        +  L+ E+K+ +  P+A+GFGISK E V+ V  WGADGVI+GSA +++L      E+G+ +L ++   +K +
Sbjct:  129 LNIIWLISPTTNKTRAQELARACKDWIYVISRTGVTGLETEFDKQIPKLIGELKKVTKAPIALGFGISKSEQVKLVKSWGADGVIIGSACMQIL-----LEKGVDQLSEWISVMKKS 240          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPK (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain KT2440) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  +  P++VGFGI  PE    +A   ADGV+VGSA+V  + +A+S ++ + ++     +L
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAANIARL-ADGVVVGSALVDKIAQAKSADQAVTDVLSLCSAL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEP1 (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  +  P++VGFGI  PE    +A   ADGV+VGSA+V  + +A+S ++ + ++     +L
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAANIARL-ADGVVVGSALVDKIAQAKSADQAVTDVLSLCSAL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEAE (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa GN=trpA PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 373
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA A+   HV+  +  ++  +  P+ +GFGI   EH   VA   ADGV+VGSA++  + +A+   + +K++
Sbjct:  148 IDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIAKARDNAQAVKDV 253          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_DEHSB3.437e-1634.75Tryptophan synthase alpha chain OS=Dehalococcoides... [more]
TRPA_DEHE13.437e-1634.75Tryptophan synthase alpha chain OS=Dehalococcoides... [more]
TRPA_RHOSK4.489e-1641.03Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]
TRPA_PSEPG4.489e-1636.84Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_NOVAD4.489e-1642.59Tryptophan synthase alpha chain OS=Novosphingobium... [more]
TRPA_ERYLH4.489e-1640.87Tryptophan synthase alpha chain OS=Erythrobacter l... [more]
TRPA_CYAME4.489e-1635.04Tryptophan synthase alpha chain OS=Cyanidioschyzon... [more]
TRPA_PSEPK5.862e-1636.84Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_PSEP15.862e-1636.84Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_PSEAE5.862e-1638.32Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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