BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEA7 (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain PA7) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 373
            +  +  TTPTT  +R+  ++E S GFVY VS  GVTGA A+   HV+  +  ++  +  P+ +GFGI   EH   VA   ADGV+VGSA+++ + +A      +K++
Sbjct:  148 IDFIRLTTPTTGDERLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIERIAKAGDTARAVKDV 253          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_THEP3 (Tryptophan synthase alpha chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            K  + L+    PT+  +R+K I E  +GFVY VS  GVTGAR  I   ++  ++ + + +  P A+GFGIS PE  +++  + +DG+IVGSA+V+ + +  +  E L+E++ F   LK  L
Sbjct:  144 KYGIYLIPLVAPTSK-ERIKLITENGKGFVYCVSITGVTGAREDIETDIEEYMKTVSQYTNMPKAIGFGISTPEMAKKLKDF-SDGIIVGSALVERIAKGYNKSEMLQEVKSFVSILKEVL 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPU (Tryptophan synthase alpha chain OS=Pseudomonas putida GN=trpA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  +  P++VGFGI  PE    +A   ADGV+VGSA+V  + +A S ++ + ++     +L
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAANIARL-ADGVVVGSALVDKIAQATSADQAVNDVLSLCSAL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSM (Tryptophan synthase alpha chain OS=Geobacter sp. (strain M21) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L L+   TPT+ + R+  +     GF+Y VS  GVTGAR++++  +   + E++ +   P+ VGFGIS PE   +VA   ADGV+VGSA+VK   + Q  E  L++L  F  +LK  +
Sbjct:  147 LDLIFLLTPTSDSSRVAMVARQGSGFIYYVSVTGVTGARSAVADDLAARVTEVRGALELPLVVGFGISTPEQAGEVA-QAADGVVVGSALVKYFEKYQGAEL-LEQLGGFVSALKQGV 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_AZOVD (Tryptophan synthase alpha chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            L  +  TTPTT   R+  ++  S GFVY VS  GVTGA A+   HV+  +  ++  +  P+ +GFGI  PEH   VA   A+GV+VGSA+V  + +A S E+ + ++    + L
Sbjct:  148 LDFIRLTTPTTDDKRLPRVLAGSSGFVYYVSVAGVTGAHAASLEHVEQAVARLRRHTDLPLCIGFGIRSPEHAGSVARL-AEGVVVGSALVDRIAKAGSKEQAVGDVLGLCREL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PELPD (Tryptophan synthase alpha chain OS=Pelobacter propionicus (strain DSM 2379) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSALP 409
            L +    TPT+   R+  +     GFVY V+  GVTGAR  +S  +   L +++   + P+  GFGIS P+    VA   ADGV+VGSA+VKL  +  S EE  +E+ +F  SL+ A+P
Sbjct:  147 LQVAFLLTPTSTDSRIATVGRLGRGFVYYVTVTGVTGARQQVSTTLGGELAKVRAKISVPIVAGFGISTPQQAADVAAM-ADGVVVGSALVKLF-QLHSGEELRQEVTRFVASLRQAIP 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MYCIT (Tryptophan synthase alpha chain OS=Mycobacterium intracellulare GN=trpA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 2
Query:   50 RLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            RL  +    P++   R+   VEAS GFVY  S++GVTGAR  +S     L+  +KE S  PV VG G+   E   Q+ G+ ADGVIVGSA+V  LG+      GL  L    + L + +
Sbjct:  152 RLDRIFLVAPSSTPQRLAMTVEASRGFVYAASTMGVTGARDVVSNAAPELVGRVKEISDIPVGVGLGVRSGEQAAQIGGY-ADGVIVGSALVSALGDG-----GLTALRALTEELAAGV 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOBB (Tryptophan synthase alpha chain OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L L+   TPT+   R+ ++     GF+Y VS  GVTGAR++++  +   + E++ +   P+ VGFGIS PE   +VA   ADGV+VGSA+VK   + Q  E  L++L  F  +LK  +
Sbjct:  147 LDLIFLLTPTSDGSRIASVARQGSGFIYYVSVTGVTGARSAVADDLAARVTEVRGALELPLVVGFGISTPEQAGEVAR-AADGVVVGSALVKYFEKYQGAEL-LEQLGGFVSALKQGV 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CARHZ (Tryptophan synthase alpha chain OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=trpA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKS 400
            L L+    PTT   R++ IV  + GF+Y VS  GVTGAR S+   V +LL+ +K+ +  PV +GFGI KPE +  +  +  DGVIVGSA+V+++    Q+  E  K LE  A  +++
Sbjct:  147 LDLIPLVAPTTGQKRLEKIVGQASGFIYCVSVTGVTGARDSLPAEVISLLQNVKKLTELPVCLGFGIGKPEQIAYIKDY-CDGVIVGSALVEIIENYVQNRMEKDKVLELIATKVQT 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEE4 (Tryptophan synthase alpha chain OS=Pseudomonas entomophila (strain L48) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  +  P++VGFGI  PE    +A   ADGV+VGSA+V  + +A+   + +K++     +L
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAAAIARL-ADGVVVGSALVDKIAQAKDAGQAVKDVLSLCSAL 260          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_PSEA75.862e-1638.32Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_THEP37.656e-1637.19Tryptophan synthase alpha chain OS=Thermoanaerobac... [more]
TRPA_PSEPU7.656e-1636.84Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_GEOSM7.656e-1638.98Tryptophan synthase alpha chain OS=Geobacter sp. (... [more]
TRPA_AZOVD7.656e-1638.60Tryptophan synthase alpha chain OS=Azotobacter vin... [more]
TRPA_PELPD1.000e-1539.50Tryptophan synthase alpha chain OS=Pelobacter prop... [more]
TRPA_MYCIT1.000e-1540.34Tryptophan synthase alpha chain OS=Mycobacterium i... [more]
TRPA_GEOBB1.000e-1538.98Tryptophan synthase alpha chain OS=Geobacter bemid... [more]
TRPA_CARHZ1.000e-1541.03Tryptophan synthase alpha chain OS=Carboxydothermu... [more]
TRPA_PSEE41.306e-1536.84Tryptophan synthase alpha chain OS=Pseudomonas ent... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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