BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PHEZH (Tryptophan synthase alpha chain OS=Phenylobacterium zucineum (strain HLK1) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEG-----LKELEKFAKSLKSA 403
            +SL+   TPTT   R+K +V  + GFVY VS  GVTG + + +  V   +  ++++S  PVAVGFGI  PE   QVA   AD V+VGSA+V  + EA    E      L ++E  AK+++ A
Sbjct:  150 VSLIRLATPTTGDARLKVVVRRTSGFVYYVSVAGVTGVKEADAAAVAPNVERVRKASGLPVAVGFGIKTPERAAQVA-QVADAVVVGSALVDEVAEAVDMNEDVTARVLSKVESLAKAVRLA 270          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_DESAA (Tryptophan synthase alpha chain OS=Desulfatibacillum alkenivorans (strain AK-01) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   62 VLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL-EKFAKSLKSA 403
            +    PTT  DRMK I   + GF+YLVS  GVTG++   S  V  +   +K  +  PV VGFGIS PEHV+ VA   +DGV+VGSA  +L+ E      GL  + +++ +SLK+A
Sbjct:  150 IRLVAPTTGQDRMKQIAGEASGFIYLVSMTGVTGSQGLDSSKVADVNAPLKAVTDLPVCVGFGISTPEHVKAVAA-VSDGVVVGSAFERLI-EENLENRGLHTMVQEYTESLKAA 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACA2 (Tryptophan synthase alpha chain OS=Bacillus amyloliquefaciens (strain FZB42) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWG--ADGVIVGSAMVKLLGEAQSP-------EEGLKELEKFAKS 391
            K  ++ +    PT+  DR+K I E + GFVY VSS+GVTG R+     V + +R++KE S+ PVAVGFGIS   + +QV G    +DGV+VGSA+VK + E ++         + L E E++AK+
Sbjct:  137 KENIAYISLVAPTSE-DRLKIITEQACGFVYCVSSLGVTGVRSEFDPSVYSFIRKVKEFSSVPVAVGFGIS---NRKQVDGMNEISDGVVVGSALVKKIEELKTKLVNPGTRADALLEFEEYAKT 257          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_AQUAE (Tryptophan synthase alpha chain OS=Aquifex aeolicus GN=trpA PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASIS-GHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            K  LS V    PT+   R+K I EA++   Y VS  G TGAR  +    ++  + E +E   KPV VGFG+SK EH +++  + ADGV+VGSA+VKL G+ +     +++L    K LK  L
Sbjct:  145 KYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSF-ADGVVVGSALVKLAGQKK-----IEDLGNLVKELKEGL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_VIBME (Tryptophan synthase alpha chain OS=Vibrio metschnikovii GN=trpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLL-GEAQSPEEGLKELEKFAKSLKSA 403
            K  +  +    PT   + ++++ E   G+ YL+S  GVTGA    +  V  LL  + + S  P  +GFGIS+PE V+Q    GA G I GSA+VK++      PE  L EL+ F  ++KSA
Sbjct:  143 KYAIHPIFIAPPTASDETLQSVAELGSGYTYLLSRSGVTGAETKANMPVHALLERLNQFSAPPRRLGFGISEPEQVKQAIESGAAGAISGSAVVKIIEHHLAKPEAMLAELKTFVSAMKSA 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_ROSCS (Tryptophan synthase alpha chain OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLK 397
            L L+ F  PTTP +R+  I   + GF+Y VS  GVTGAR  +   +   L  ++  +T P+ VGFGIS  +HV++V G  A G IV SA++ ++ E   P E +    +F + L+
Sbjct:  148 LDLIFFVAPTTPDERIARITALASGFIYCVSLTGVTGARRELWSGLPAFLERVRRHTTLPLVVGFGISSADHVREV-GRHAAGAIVASALINVI-EQSHPGEYVARAAEFVRLLR 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPW (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain W619) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 394
            +  +  TTPTT   R+  ++E S GFVY VS  GVTGA ++ + HV   +  ++  +  P++VGFGI  PE    +A   ADGV+VGSA+V  + +A+  ++ + ++     +L
Sbjct:  148 IDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHVTEAIARLRRHTDLPISVGFGIRTPEQAAAIARL-ADGVVVGSALVDKIAQAKDADQAVADVLSLCSAL 260          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOUR (Tryptophan synthase alpha chain OS=Geobacter uraniireducens (strain Rf4) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L ++   TPT+   R++ +     GF+Y VS  GVTGAR S++  V   +++I+E  T P+ VGFGIS P    +VA   ADGV+VGSA+VKL  E +  +E  + L  F  +LK+ +
Sbjct:  147 LDVIFLLTPTSDEARIRKVANLGSGFIYYVSVTGVTGARTSVADTVFPDVKKIREHVTLPLVVGFGISDPVQAGRVAA-VADGVVVGSALVKLFEEFRG-DELRERLGGFVAALKAGV 262          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_GEOKA (Tryptophan synthase alpha chain OS=Geobacillus kaustophilus GN=trpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 52/125 (41.60%), Postives = 74/125 (59.20%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMV----KLLGEAQSPEE---GLKELEKFAKSLKSAL 406
            L L+    PT+   R++ I  A++GF+Y VSS+GVTG R ++   +   LRE+K  S  PVAVGFGIS PE V  +     DGV+VGSA+V    +L    Q+P+E    + E   +A+SL + L
Sbjct:  139 LPLISLVAPTSK-QRIERIASAAQGFLYCVSSLGVTGVRETLPETLGDFLREVKRHSRVPVAVGFGISAPEQVAMLKE-VCDGVVVGSALVQKVEQLAPRLQTPDEREAAVAEFAAYARSLAAPL 261          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_BACP2 (Tryptophan synthase alpha chain OS=Bacillus pumilus (strain SAFR-032) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-------AQSPEEGLKELEKFAKS 391
            +S +    PT+  +R+  IVE +EGFVY VSS+GVTG R +    +   ++++K+ S  PVAVGFGIS  E V  +    +DGV+VGSA+VK + E       + + ++ L+E E +AK+
Sbjct:  142 ISYISLVAPTSK-ERLVNIVEQAEGFVYCVSSLGVTGVRQTFDESITDFIQQVKQLSHIPVAVGFGISTREQVDSMNKL-SDGVVVGSALVKKIEELHDQLLASDTRQDALREFETYAKT 259          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_PHEZH1.306e-1540.98Tryptophan synthase alpha chain OS=Phenylobacteriu... [more]
TRPA_DESAA1.306e-1543.48Tryptophan synthase alpha chain OS=Desulfatibacill... [more]
TRPA_BACA21.306e-1541.60Tryptophan synthase alpha chain OS=Bacillus amylol... [more]
TRPA_AQUAE1.306e-1540.16Tryptophan synthase alpha chain OS=Aquifex aeolicu... [more]
TRPA_VIBME2.228e-1537.19Tryptophan synthase alpha chain OS=Vibrio metschni... [more]
TRPA_ROSCS2.228e-1538.26Tryptophan synthase alpha chain OS=Roseiflexus cas... [more]
TRPA_PSEPW2.228e-1535.96Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_GEOUR2.228e-1540.68Tryptophan synthase alpha chain OS=Geobacter urani... [more]
TRPA_GEOKA2.228e-1541.60Tryptophan synthase alpha chain OS=Geobacillus kau... [more]
TRPA_BACP22.228e-1540.00Tryptophan synthase alpha chain OS=Bacillus pumilu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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