BQ623332

Overview
NameBQ623332
Unique NameBQ623332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8639 contig Csv1_Contig8639:68..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  218 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  218 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  199 LAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   78 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.162e-21
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  220 LAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.048e-21
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  218 LAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
The following BLAST results are available for this feature:
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2A_SOLLC4.718e-2197.87Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_PETSP4.718e-2197.87Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_APIGR4.718e-2197.87Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU4.718e-2197.87Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN4.718e-2197.87Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_SINAL4.718e-2197.87Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA4.718e-2197.87Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PETSP4.718e-2197.87Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL6.162e-2195.74Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB48_MAIZE8.048e-2195.74Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00423 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623332 ID=BQ623332; Name=BQ623332; organism=Citrus sinensis; type=EST; length=356bp
TTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGG
CAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACA
ACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCG
GTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATT
GATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTG
CTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACG
GTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAATCTAGTTAC
AAGTTT
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