BQ623332

Overview
NameBQ623332
Unique NameBQ623332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8639 contig Csv1_Contig8639:68..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.048e-21
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.048e-21
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.048e-21
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  222 LAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.048e-21
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.048e-21
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  217 LAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 138
            LAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  216 LAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.373e-20
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  219 LAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.793e-20
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 141
            LAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  182 LAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
The following BLAST results are available for this feature:
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2F_SOLLC8.048e-2195.74Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC8.048e-2195.74Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB28_PEA8.048e-2195.74Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH8.048e-2195.74Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH8.048e-2195.74Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB27_TOBAC1.051e-2095.74Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_SOYBN1.051e-2097.87Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE1.051e-2097.83Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_MAIZE1.373e-2095.74Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA1.793e-2095.74Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00423 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623332 ID=BQ623332; Name=BQ623332; organism=Citrus sinensis; type=EST; length=356bp
TTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGG
CAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACA
ACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCG
GTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATT
GATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTG
CTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACG
GTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAATCTAGTTAC
AAGTTT
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