BQ623332

Overview
NameBQ623332
Unique NameBQ623332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8639 contig Csv1_Contig8639:68..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.529e-14
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 135
            LAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  228 LAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 135
            LA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  207 LASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 138
            LAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  207 LAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.919e-12
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 138
            LAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  222 LAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
The following BLAST results are available for this feature:
BLAST of BQ623332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2_DUNSA9.529e-1475.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE2.772e-1375.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE8.067e-1373.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO8.919e-1276.09Chlorophyll a-b binding protein AB10, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00423 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623332 ID=BQ623332; Name=BQ623332; organism=Citrus sinensis; type=EST; length=356bp
TTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGG
CAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACA
ACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCG
GTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATT
GATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTG
CTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGTCGCACG
GTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAATCTAGTTAC
AAGTTT
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