BQ623337

Overview
NameBQ623337
Unique NameBQ623337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig760 contig Csv1_Contig760:860..1428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 2
Query:    5 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 343
            + +  DIVFVL+ K H  FKR G D+     +SL EALCG    +  LDGR + +  +  +V++P   + +  EG+P+ + P  RG L I F V FPE +      +LE VLP
Sbjct:  229 NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: DJB13_MOUSE (DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 40/113 (35.40%), Postives = 66/113 (58.41%), Query Frame = 2
Query:    2 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVL 340
            P+ +  DI+F++++K HP+F+R+ D+LF  + + L +AL      +  LD R L I     ++V P  FK +  EGMP+ + P  +G L+I F + FP  L+P + +ML   L
Sbjct:  204 PNIIPADIIFIVKEKLHPRFRREHDNLFFVYPIPLGKALTCCTVEVKTLDDRLLNIPIN--DIVHPKYFKIVPGEGMPLPENPSKKGDLFIFFDIQFPTRLTPQKKQMLRQAL 314          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEEL (DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 2
Query:   17 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES-LSPDQCKMLETVLPPRT 352
            GD+ F ++ ++HP+F+RKGDDL+   T+SL +AL GF+  I HLDG   ++K Q  +V  P       DEGMP  +    +G L + F V+FP++ LS +Q   +  +L   T
Sbjct:  236 GDLKFKIRIQKHPRFERKGDDLYTNVTISLQDALNGFEMEIQHLDGH--IVKVQRDKVTWPGARLRKKDEGMPSLEDNNKKGMLVVTFDVEFPKTELSDEQKAQIIEILQQNT 346          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: DNAJ1_DROME (DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 2
Query:    2 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 343
            P+    DIVF+++ K H  FKR+G DL     +SL +ALCG    +  L G ++ +     E++KP   + IN  G+P+ + P  RG L + F + FP++L+P     L  +LP
Sbjct:  221 PNKTPADIVFIIRDKPHSLFKREGIDLKYTAQISLKQALCGALVSVPTLQGSRIQVNPNH-EIIKPTTTRRINGLGLPVPKEPSRRGDLIVSFDIKFPDTLAPSLQNQLSELLP 333          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: DJB13_HUMAN (DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 39/113 (34.51%), Postives = 66/113 (58.41%), Query Frame = 2
Query:    2 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVL 340
            P+ +  DI+F++++K HP+F+R+ D+LF  + + L +AL      +  LD R L I     +++ P  FK +  EGMP+ + P  +G L+I F + FP  L+P + +ML   L
Sbjct:  204 PNIIPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDRLLNIPIN--DIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQAL 314          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: SIS1_YEAST (Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   29 FVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLE 331
            FV+Q+K HP FKR GDDL     LS  E+L GF   I  +DGR L L + QP   V+P Q      +GMP  + P  RG L + + VD+P SL+  Q + ++
Sbjct:  251 FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 349          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.281e-14
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    2 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKS----QPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQ 316
            PD    DI FVL +K HP F R GDDL ++  LSL EAL GF   I+ +DG++L + S    QPG  +    F      GMP+ + P  RG + I   V FP  L+P Q
Sbjct:  270 PDGTVQDIQFVLAEKPHPVFTRSGDDLRMQVELSLKEALLGFSKQISTIDGKKLKVSSSLPTQPGYEITYPGF------GMPLPKNPSQRGNMIIECKVKFPTELTPAQ 372          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: XDJ1_SCHPO (DnaJ protein homolog xdj1 OS=Schizosaccharomyces pombe GN=xdj1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   17 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGF-QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTD 370
            GD++  L QK HP F+R GDDL  +  +SL EAL GF + ++T LDGR L      G+++ P     I  EGM    +  +RG LY+   ++FP+   +   + ++L  +LP    V + D
Sbjct:  251 GDVILQLHQKPHPVFERLGDDLKAKLKISLAEALTGFNRVILTTLDGRGLEYVQPIGKILHPGDCLIIPGEGMYKDSKTDLRGDLYLEVDIEFPKDGLIGTTEIEILRDILPSIPKVSVMD 371          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: DJB11_PONAB (DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    5 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 322
            D   GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  233 DGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Match: DJB11_HUMAN (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    5 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 322
            D   GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  233 DGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
The following BLAST results are available for this feature:
BLAST of BQ623337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
DNJB1_BOVIN1.096e-1438.94DnaJ homolog subfamily B member 1 OS=Bos taurus GN... [more]
DJB13_MOUSE1.096e-1435.40DnaJ homolog subfamily B member 13 OS=Mus musculus... [more]
DNJ20_CAEEL1.432e-1438.94DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=d... [more]
DNAJ1_DROME1.870e-1435.09DnaJ protein homolog 1 OS=Drosophila melanogaster ... [more]
DJB13_HUMAN1.870e-1434.51DnaJ homolog subfamily B member 13 OS=Homo sapiens... [more]
SIS1_YEAST7.106e-1442.16Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 P... [more]
PSI1_SCHPO9.281e-1442.20Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]
XDJ1_SCHPO1.583e-1335.54DnaJ protein homolog xdj1 OS=Schizosaccharomyces p... [more]
DJB11_PONAB6.016e-1335.85DnaJ homolog subfamily B member 11 OS=Pongo abelii... [more]
DJB11_HUMAN6.016e-1335.85DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00428 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00428 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623337 ID=BQ623337; Name=BQ623337; organism=Citrus sinensis; type=EST; length=569bp
GCCCGACACTGTCACAGGTGACATTGTATTTGTTCTACAACAGAAAGAGC
ACCCGAAATTTAAGCGAAAGGGTGATGACCTATTTGTTGAGCACACCCTG
TCACTGACAGAAGCTCTCTGTGGCTTTCAATTTGTAATAACTCATTTGGA
TGGCCGGCAACTCCTCATCAAATCCCAGCCTGGGGAAGTAGTCAAGCCGG
ACCAATTCAAGGCCATAAATGATGAAGGAATGCCTATGTATCAGAGGCCA
TTTATGAGGGGCAAACTGTACATTCATTTCAGTGTTGACTTCCCTGAGTC
ACTGAGCCCAGACCAGTGCAAGATGCTGGAGACCGTACTACCTCCAAGGA
CCTCAGTCCAGCTCACCGATATGGAACTGGATGAGTGTGAAGAAACAACC
CTGCATGATGTGAACATTGAGGAGGAAATGCGAAGGAAGCAACAAGCAGC
TCAGGAGGCATACGATGAAGATGACGATATGCAAGGTGGTGCCCAGAGAG
TGCAGTGTGCTCAGCAGTGATGATGTAGAAGAAAAGGGGTGGCCTGATTT
AGTATTTTCATTGGTTGGG
back to top