BQ623356

Overview
NameBQ623356
Unique NameBQ623356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1978 contig Csv1_Contig1978:643..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   70 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   70 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   70 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   70 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   70 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   70 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.114e-25
Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   70 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  +   D++K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   70 SYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD  D  A     Y+H+R+QQRNG+K LTTVQG+ E++  ++ILK L+K+F CNGN+V D  +G++IQLQGD R  V  FL+    + K  IKIHGF
Sbjct:    8 SFDPFADTGDDEA-SSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.938e-25
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   70 SYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            S+DPFAD  D        Y+H+R+QQRNG+K LTTVQG+ E++  ++ILK LKK+F CNGN+V D  +G++IQLQGD R  V  F++    + K  IKIHGF
Sbjct:    8 SFDPFADTGDD-ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   76 DPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            DPFAD  D  A      +H+R+QQRNG+K LTTVQGL  +F  ++IL+ LKK+F CNG +V D  LG+VIQLQGD R  VM FL +   + K  IKIHGF
Sbjct:   11 DPFADTGDDDAQ-PLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
The following BLAST results are available for this feature:
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EIF1_HUMAN2.384e-2550.48Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN2.384e-2550.48Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1B_PIG2.384e-2550.48Eukaryotic translation initiation factor 1b OS=Sus... [more]
EIF1B_MOUSE2.384e-2550.48Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA2.384e-2550.48Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN2.384e-2550.48Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_MOUSE3.114e-2549.52Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_ASHGO4.067e-2552.94Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_YEAST6.938e-2551.96Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_SCHPO8.481e-2355.00Protein translation factor sui1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00447 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00447 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623356 ID=BQ623356; Name=BQ623356; organism=Citrus sinensis; type=EST; length=572bp
TGACCTTCGAAGGTTTTAGGTCTTCTATAAGCAAAGTACATGGTTGACAT
AGACAGCCAGATTCCAACTTCCTATGATCCCTTTGCTGATATAAAGGACT
CCCTTGCCCCAGGTGACAAAGGGTACGTGCATCTCCGCGTACAGCAGAGG
AATGGAAAGAAGTGCTTAACAACTGTTCAAGGACTTAAAGAGGATTTTGG
CTACCAGAAGATCCTCAAGGACCTCAAAAAGGAGTTCTGTTGTAACGGGA
ATGTTGTCAATGACAAAGTTCTCGGGAAGGTGATTCAGCTTCAAGGTGAT
CATCGGAAGAATGTTATGATCTTTCTCGTTAAGAGTAAGATTGTGGACAA
GGATCGTATCAAGATTCATGGTTTCTAAGCAAATGTGGTGATTAATACAT
ATGGTTATGGTATAATATATGTGGTCTTATGTGATCTGCAGAGCATATCT
GTAGTCTGTTCTTGTTGAGGTTTTCTGTATTTCTCTGGACTTGGATTTAA
GATTTTCTGTTCTCAAGTTATGGATAATGATAATAAAAGTTATGGATATT
TTTATACGGAAAAAAAAAAAAA
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