BQ623356

Overview
NameBQ623356
Unique NameBQ623356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1978 contig Csv1_Contig1978:643..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   70 SYDPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            ++DPFAD IK +      G VH+R+QQRNG+K LTTVQGL  ++  +KI++  KKEF CNG V+     G+V+QLQGD R+N+  +L KS +   +++K+HGF
Sbjct:    8 TFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.497e-22
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   76 DPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            DPFAD IK +      G VH+R+QQRNG+K LTTVQGL  ++  +KI++  KKEF CNG V+     G+V+QLQGD R+N+  +L K  +   D++K+HGF
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  139 VQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            +QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Match: SUI1_MIMIV (Protein translation factor SUI1 homolog OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R464 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   73 YDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVV-NDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 375
            YDPF D  D+    +K  +H++ +QR   K +T ++ + E    +  LK LK  F C+G++  N     K IQL GDHR+ V  FL+K+ IV +  I +HG+
Sbjct:    7 YDPFNDGLDTEQHFEK--IHIKTKQRTKTKSITIIENIPEKIDLKLFLKKLKYTFHCSGSIQQNYDDDSKFIQLSGDHRELVKNFLIKNSIVKESNIVMHGY 106          
The following BLAST results are available for this feature:
BLAST of BQ623356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SUI1_ANOGA1.447e-2248.54Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME5.497e-2249.50Protein translation factor SUI1 homolog OS=Drosoph... [more]
EIF1_CHICK9.703e-1951.90Eukaryotic translation initiation factor 1 (Fragme... [more]
SUI1_MIMIV9.726e-1137.25Protein translation factor SUI1 homolog OS=Acantha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00447 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00447 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623356 ID=BQ623356; Name=BQ623356; organism=Citrus sinensis; type=EST; length=572bp
TGACCTTCGAAGGTTTTAGGTCTTCTATAAGCAAAGTACATGGTTGACAT
AGACAGCCAGATTCCAACTTCCTATGATCCCTTTGCTGATATAAAGGACT
CCCTTGCCCCAGGTGACAAAGGGTACGTGCATCTCCGCGTACAGCAGAGG
AATGGAAAGAAGTGCTTAACAACTGTTCAAGGACTTAAAGAGGATTTTGG
CTACCAGAAGATCCTCAAGGACCTCAAAAAGGAGTTCTGTTGTAACGGGA
ATGTTGTCAATGACAAAGTTCTCGGGAAGGTGATTCAGCTTCAAGGTGAT
CATCGGAAGAATGTTATGATCTTTCTCGTTAAGAGTAAGATTGTGGACAA
GGATCGTATCAAGATTCATGGTTTCTAAGCAAATGTGGTGATTAATACAT
ATGGTTATGGTATAATATATGTGGTCTTATGTGATCTGCAGAGCATATCT
GTAGTCTGTTCTTGTTGAGGTTTTCTGTATTTCTCTGGACTTGGATTTAA
GATTTTCTGTTCTCAAGTTATGGATAATGATAATAAAAGTTATGGATATT
TTTATACGGAAAAAAAAAAAAA
back to top