BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10264 contig Csv1_Contig10264:368..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.263e-50
Identity = 106/216 (49.07%), Postives = 146/216 (67.59%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL-KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  + L SK+ G+ +KLV A+F++A +LQP+IIFIDE+DS L +RR  +H+A   +KTEF+  +DG  +  + RV+V+ ATNRP ELDEA+LRR  +   + +P  + R ++LK +L K        +   LA L +G++GSDL  + K AA   IREL
Sbjct:  304 KQALQEIVILPALRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIREL 517          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 107/217 (49.31%), Postives = 150/217 (69.12%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  ++L SK+ G+ +KLV A+FS+A +LQP+IIFIDEVDS L +RR  +H+A   +KTEF+  +DG  +  + RV+V+ ATNRP ELD+A+LRR  +   + +P+ + R  +LK +L  +G  + E  +   L+ L EG++GSD+  + K AA   IREL
Sbjct:  338 KQALQEIVILPSIRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEK-ELTQLSRLTEGYSGSDITALAKDAALGPIREL 551          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 107/217 (49.31%), Postives = 150/217 (69.12%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  ++L SK+ G+ +KLV A+FS+A +LQP+IIFIDEVDS L +RR  +H+A   +KTEF+  +DG  +  + RV+V+ ATNRP ELD+A+LRR  +   + +P+ + R  +LK +L  +G  + E  +   L+ L EG++GSD+  + K AA   IREL
Sbjct:  335 KQALQEIVILPSIRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEK-ELTQLSRLTEGYSGSDITALAKDAALGPIREL 548          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.188e-50
Identity = 107/217 (49.31%), Postives = 150/217 (69.12%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  ++L SK+ G+ +KLV A+F++A +LQP+IIFIDEVDS L +RR  +H+A   +KTEF+  +DG  +  + RV+V+ ATNRP ELDEA+LRR  +   + +P+ + R  +LK +L  +G  + +  +   LA L +G++GSDL  + K AA   IREL
Sbjct:  348 KQALQEIVILPSLRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLRERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARLTDGYSGSDLTALAKDAALGPIREL 561          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.824e-49
Identity = 106/217 (48.85%), Postives = 150/217 (69.12%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  ++L SK+ G+ +KLV A+F++A +LQP+IIFIDEVDS L +RR  +H+A   +KTEF+  +DG  +  + RV+V+ ATNRP ELDEA+LRR  +   + +P+ + R  +LK +L  +G  + +  +   LA + +G++GSDL  + K AA   IREL
Sbjct:  316 KQALQEIVILPSLRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIREL 529          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 1.824e-49
Identity = 106/217 (48.85%), Postives = 150/217 (69.12%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  ++L SK+ G+ +KLV A+F++A +LQP+IIFIDEVDS L +RR  +H+A   +KTEF+  +DG  +  + RV+V+ ATNRP ELDEA+LRR  +   + +P+ + R  +LK +L  +G  + +  +   LA + +G++GSDL  + K AA   IREL
Sbjct:  349 KQALQEIVILPSLRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIREL 562          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.824e-49
Identity = 106/217 (48.85%), Postives = 150/217 (69.12%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  ++L SK+ G+ +KLV A+F++A +LQP+IIFIDEVDS L +RR  +H+A   +KTEF+  +DG  +  + RV+V+ ATNRP ELDEA+LRR  +   + +P+ + R  +LK +L  +G  + +  +   LA + +G++GSDL  + K AA   IREL
Sbjct:  351 KQALQEIVILPSLRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIREL 564          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.824e-49
Identity = 100/218 (45.87%), Postives = 140/218 (64.22%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENI---DFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K AL E VILP   P LF    L  P KG+LL+GPPG GKT+LAKA+A ES  +F N+  S+L SKW GD++K +  +F +A   QP+IIFIDE+DS L +R   D E    MKTEF+  +DG T+  + R++V+ ATNRP ELD+A+LRR P+   + +PD + R +++   LK   + + +   D  Y+A    GF+ SDL+ +CK+AA   IRE+
Sbjct:  248 KAALEEAVILPALNPNLFKG--LRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREI 463          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.824e-49
Identity = 106/217 (48.85%), Postives = 149/217 (68.66%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  ++L SK+ G+ +KLV A+F++A +LQP+IIFIDEVDS L +RR  +H+A   +KTEF+  +DG  +  + RV+V+ ATNRP ELDEA+LRR  +   + +P+ + R  +LK +L  +G  + +  +   LA +  G++GSDL  + K AA   IREL
Sbjct:  349 KQALQEIVILPSLRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTNGYSGSDLTALAKDAALGPIREL 562          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49
Identity = 104/217 (47.93%), Postives = 149/217 (68.66%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P +G+LL+GPPG GKTMLAKA+A ES A F N+  ++L SK+ G+ +KLV A+F++A +LQP+IIFIDEVDS L +RR  +H+A   +KTEF+  +DG  +    R++V+ ATNRP ELD+A+LRR  +   + +P+ + R  +LK +L  +G  + +  +   LA + +G++GSDL  + K AA   IREL
Sbjct:  348 KQALQEIVILPSLRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQK-ELAQLARMTDGYSGSDLTALVKDAALGPIREL 561          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
SPAST_DANRE1.263e-5049.07Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
SPAST_XENTR2.814e-5049.31Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_XENLA2.814e-5049.31Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
SPAST_PIG8.188e-5049.31Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_RAT1.824e-4948.85Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE1.824e-4948.85Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN1.824e-4948.85Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_CAEEL1.824e-4945.87Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_BOVIN1.824e-4948.85Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
SPAST_CHICK4.064e-4947.93Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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