BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10264 contig Csv1_Contig10264:368..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.868e-48
Identity = 107/219 (48.86%), Postives = 148/219 (67.58%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-TDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLC---EGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  LQP+IIFIDEVDS L +R +++HEA   +KTEF+  +DG     +  R++VLAATNRP ELDEA LRR  +   + +P+ + R  +L  +L  +K    +D + LA L    +G++GSDL  + K AA   IREL
Sbjct:  499 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRELLLSRLL--QKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIREL 713          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.868e-48
Identity = 106/219 (48.40%), Postives = 148/219 (67.58%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLC---EGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +++HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D + L  L    +G++GSDL  + K AA   IREL
Sbjct:  504 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLSRLL--QKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEPIREL 718          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.868e-48
Identity = 100/217 (46.08%), Postives = 148/217 (68.20%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            +KQ+L E VILP  RP++F+   L  P KG+LL+GPPG GKTM+AKA+A ES   F ++  S+L SK+ GD +KLV A+F++A   QP+IIFIDE+DS L +R +++ EA   +KTE +  +DG  T+ + RV+V+ ATNRP +LD+A LRRL +   +G+P+ + R QI++ +L G++        + LA + +G++G DL  +CK AAY  IR L
Sbjct:  392 VKQSLMESVILPNLRPDVFTG--LRAPPKGLLLFGPPGNGKTMIAKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTERSSNESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQINSLAEVTQGYSGFDLAALCKDAAYEPIRRL 606          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 107/219 (48.86%), Postives = 148/219 (67.58%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD---YLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +S+HEA   +KTEF+  +DG   + +  R++VLAATNRP ELDEA LRR  +   + +PD + R  +L  +L  +K    +D +    LA + +G++GSDL    K AA   IREL
Sbjct:  492 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL--QKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEPIREL 706          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 95/218 (43.58%), Postives = 146/218 (66.97%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+AL E+V+LP +RP++F+   +  P KGVLL+GPPGTGKTM+ + +A +  A F N+  S+L SKW G+ +KLV A+FS+A    P++IFIDE+DS L  R  S+HE+   +KTEF+   DG  T  + R++VL ATNRP ELDEA  RR  +   I +P+ + R QI++ +L G + +  N + + +  L +G++G+D+ ++C +AA   IR++ D
Sbjct:  325 KKALREIVVLPFKRPDVFTG--IRAPPKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIVQNLLVGTRHDITNHNLERIRELTDGYSGADMRQLCTEAAMGPIRDIGD 540          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.230e-47
Identity = 106/219 (48.40%), Postives = 147/219 (67.12%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-TDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLC---EGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F+N+  ++L SK+ GD +KLV A+F++A  +QP+IIFIDEVDS L +R +++HEA   +KTEF+  +DG     +  R++VLAATNRP ELDEA LRR  +   + +P  + R  +L  +L  +K    +D + LA L    +G++GSDL  + K AA   IREL
Sbjct:  503 KQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPGVQTRELLLSRLL--QKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIREL 717          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47
Identity = 93/216 (43.06%), Postives = 143/216 (66.20%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEK-VEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K  + E+V+ P+ RP++F+   L GP KG+LL+GPPGTGKT++ K IA +SGA F ++  S+L SKW G+ +K+V A+F++A   QPA+IFIDE+DS L QR   +HE+   +KTEF+   DG TT    R++V+ ATNRP E+DEA  RRL +   I +P+   R QI+  ++  E+    + + D +    +GF+G+D+ ++C++A+   IR L
Sbjct:  419 KATIKEIVVWPMMRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIRSL 632          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.888e-46
Identity = 92/216 (42.59%), Postives = 143/216 (66.20%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEK-VEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K  + E+V+ P+ RP++F+   L GP KG+LL+GPPGTGKT++ K IA +SGA F ++  S+L SKW G+ +K+V A+F++A   QPA+IFIDE+DS L QR   +HE+   +KTEF+   DG TT    R++V+ ATNRP E+DEA  RRL +   I +P+   R QI+  ++  E+    + + + +    +GF+G+D+ ++C++A+   IR L
Sbjct:  413 KATIKEIVVWPMMRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRSL 626          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.465e-46
Identity = 94/218 (43.12%), Postives = 144/218 (66.06%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEK---VEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K  + E+V+ P+ RP++F+   L GP KG+LL+GPPGTGKT++ K IA +SGA F ++  S+L SKW G+ +K+V A+F++A   QPA+IFIDE+DS L QR   +HE+   +KTEF+   DG TT  + R++V+ ATNRP E+DEA  RRL +   I +P+   R QI+  ++  E     E+ ++   L    +GF+G+D+ ++C++AA   IR +
Sbjct:  392 KTTIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQ--ADGFSGADMTQLCREAALGPIRSI 605          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.465e-46
Identity = 94/218 (43.12%), Postives = 143/218 (65.60%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEK---VEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K  + E+V+ P+ RP++F+   L GP KG+LL+GPPGTGKT++ K IA +SGA F ++  S+L SKW G+ +K+V A+F++A   QPA+IFIDE+DS L QR   +HE+   +KTEF+   DG TT    R++V+ ATNRP E+DEA  RRL +   I +P+   R QI+  ++  E     E+ ++   L    +GF+G+D+ ++C++AA   IR +
Sbjct:  391 KTTIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQ--ADGFSGADMTQLCREAALGPIRSI 604          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
SPAST_DROMO5.868e-4848.86Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
SPAST_DROAN5.868e-4848.40Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
SPAST_DICDI5.868e-4846.08Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
SPAST_DROSI1.001e-4748.86Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]
FIGL1_CAEEL1.001e-4743.58Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
SPAST_DROVI2.230e-4748.40Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
FIGL1_MOUSE4.968e-4743.06Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
FIGL1_RAT1.888e-4642.59Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
FIGL1_XENTR2.465e-4643.12Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
FIGL1_XENLA2.465e-4643.12Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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