BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.116e-25
Identity = 76/201 (37.81%), Postives = 107/201 (53.23%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---------HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            KGVLL GPPGTGKT+LAKA A E+G  F  +  S  +  + G     V  +F  A K  P I+FIDE+D+ +G+ R S           + L  + TE     DGF+    A V+VLAATNRP  LD A+LR  R  +   +  PD   R +IL++  K  K+++ ++   +A    GF G+DL  +  +AA  + R   D
Sbjct:  208 KGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDA-IGKSRASGAFMGGNDEREQTLNQLLTEM----DGFSA-AGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQD 402          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24
Identity = 72/195 (36.92%), Postives = 107/195 (54.87%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF-------LGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            KGVLL GPPGTGKT+LAKAIA E+ A F ++  S  +  + G     V  +F  A +  P I+FIDE+D+        +G       + L  + TE     DGF+ D    V+V+AATNR   LD A+LR  R  +   + +P+   R  ILKV  K +K+ +++  + +A    GF+G+DL  +  +AA  ++R
Sbjct:  205 KGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEM----DGFSGDTG--VIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSKKKKIHKDVLLEVIARRTPGFSGADLANLLNEAAILTVR 393          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24
Identity = 78/221 (35.29%), Postives = 118/221 (53.39%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQ--KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            KQ L E+V   L+ P  F+    LG +  KGVLL GPPGTGKT+LAKA A E+G  F ++  S+ +  + G     V  +F  A K  P +IFIDE+D+   QR       H+       + +   DGF+   N  ++++AATNR   LD A+LR  R  +   +  PD   R  +LKV  + + ++E ++   +A    GF+G+DL  +  +AA  + R+
Sbjct:  170 KQELVEVVEF-LKDPRKFAE---LGARIPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSA--NEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQ 384          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 67/189 (35.45%), Postives = 105/189 (55.56%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            KGVLL GPPGTGKT+LA+A A E+G  F  +  S     + G   K +  +F+ A    PAIIFIDE+D+  G+R   D         + +   DGF+  Q + ++++ ATN P  LD+A+ R  R  +   + +PD + RA ILK  +K   + +N+D   +A    G +G++L  +  QAA ++ ++
Sbjct:  315 KGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFS--QTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQK 501          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMK-TEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAA 629
            +K+ L ++V   LR PE F+      P KGVLL GPPG GKT+LAKA++ E+   F+    S+      G     +  +F+ A +  P ++FIDE+DS  G R  S H    N    + +A  DGF + +   ++VL ATN+   LD+A+LR  R      +  P  + R  +L + LK  K   NID + LA    G+TG+D+  +  QAA
Sbjct:  174 VKKELVDVVEF-LRNPEKFNQIGAKLP-KGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNRTFSPHHPFANQTINQLLAEMDGFQSKEG--IIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAA 381          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 76/220 (34.55%), Postives = 117/220 (53.18%), Query Frame = 3
Query:   18 YELVILPLRRPELFSHGKLLGPQ--KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF-------LGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            +E ++  L+ P+ ++   ++G +  KG+LL GPPGTGKT+LAKAIA E+   F +V  S  +  + G     V  +F  A +  P I+FIDE+D+        +G       + L  + TE     DGF   +N  V+V+ ATNR   LD A+LR  R  +   + +PDR  R  ILKV  + + + E++    LA    GF+G+DL  +  +AA  + R
Sbjct:  198 FEEIVSFLKEPDKYT---IVGAKIPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDEREQTLNQLLTEM----DGF--KENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATR 408          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 77/202 (38.12%), Postives = 114/202 (56.44%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAA----VFSLAYKLQPAIIFIDEVDSFLGQ------RRTSDHEALTNM---KTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            +GVLL GPPGTGKT+ A+ +AKESG  F+    +      F D++K  AA    +FS+A +  PA +F+DE+D+  G+      RR +  EAL      + E   + D F+  Q   V+ + ATNRP ELD   +R  R+ +   IG+PD K+R QI  V   G+ + E+IDF  L     GF+G+D+  +  +AA  S+R+
Sbjct:  527 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE-----FTDSEKSGAAKINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGI-DRFSLRQ--AVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRK 720          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 82/223 (36.77%), Postives = 120/223 (53.81%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFL----GQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVE--ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E+V   LR PE +     LG  P +GVLL G PGTGKT+LAKA+A E+   FI+   S  +  + G     V  +F+ A K  P+IIFIDE+D+      G+ R   ++       + +   DGF  D N+ V+VL ATNR   LD A+ R  R  +   +  PDR  R  ILKV +  +++   +++D   +A +  GFTG+DL  +  +AA  + R
Sbjct:  355 KEELEEIVEF-LRNPERYIR---LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAARVRDLFARAKKESPSIIFIDEIDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDGF--DTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGR 571          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.652e-24
Identity = 76/219 (34.70%), Postives = 119/219 (54.34%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKT--EFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E+V   L+ P+ ++   GK+    +GVLL GPPGTGKT+LA+A+A E+   F  +  S+ +  + G     V  +F  A +  P IIFIDE+D+    R  + H      +T  + +   DGF  D    +++LAATNRP  LD A+LR  R  +   +  PD K R  IL++  +  K+   +D   +A +  G++G+DL  V  +AA  ++R
Sbjct:  150 KEELMEVVDF-LKFPKKYTEIGGKI---PRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGSDFIEMFVGIGASRVRDLFKQAREKAPGIIFIDELDAIGKSRLNAIHSNDEREQTLNQLLVEMDGF--DNTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVR 362          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.652e-24
Identity = 73/215 (33.95%), Postives = 120/215 (55.81%), Query Frame = 3
Query:    9 QALYELVILPLRRPELFSHGKLLGPQ--KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVF----SLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQA 626
            QAL EL+I P R P      + LG +  +G+LLYGPPGTGKT L +A+ +E  A  I +   ++     G+++K++   F    S A   +P++IFIDE+D  L  RR +  E    + ++   L D      +A RV+V+A+TNR   +D A+ R  R     E+  P+ ++R +IL++  K   ++ ++D   +A  C G+ G+DL  +C++A
Sbjct:   32 QALRELIIFPFRYP---LEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEID-VLCPRRDARREQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVGADLEALCREA 242          

HSP 2 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 69/222 (31.08%), Postives = 115/222 (51.80%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-----RVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            +K+ L + V  P++    F    +  P +G+LL+GPPG  KT LAKA A  + A F ++  + L S + G+ + L+   F  A    P+IIF DE D    +R     E+ +N  T    L     T+ +       ++VLAATNRP  +D A++R  R      +  PD + R +IL+V  +   + +++D   +A   + FTG++L  +C+++   S+RE
Sbjct:  294 LKKKLQQAVEWPIKHSAAFVKMGI-SPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKR---GDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGAELEGLCRESGTVSLRE 511          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
FTSH3_SYNY39.116e-2537.81Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_CYACA1.555e-2436.92Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_BACSU1.555e-2435.29Cell division protease ftsH homolog OS=Bacillus su... [more]
YME1_YEAST2.031e-2435.45Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
YME1_SCHMA2.031e-2435.85Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
FTSH_ODOSI2.031e-2434.55Cell division protease ftsH homolog OS=Odontella s... [more]
FTSHC_ARATH2.031e-2438.12Cell division protease ftsH homolog 12, chloroplas... [more]
FTSH7_ORYSJ2.031e-2436.77Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH_TREPA2.652e-2434.70Cell division protease ftsH homolog OS=Treponema p... [more]
CD48B_ARATH2.652e-2433.95Cell division control protein 48 homolog B OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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