BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10264 contig Csv1_Contig10264:368..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: YCF46_PORPU (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra purpurea GN=ycf46 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 47/191 (24.61%), Postives = 90/191 (47.12%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILK--GEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            KG+LL G  GTGK++ AKAIA +     + + I  L     G+++  +  + ++A  L P +++IDE+D       +      +         W    +++   V V+A  N    L   +LR  R  + F + +P+ +ER  I ++ L     K  +N +   L+ LC  F+G+++ +   ++ + +  E
Sbjct:  260 KGLLLVGIQGTGKSLTAKAIANDWTLPLLRLDIGKLFGGLVGESESRMREMVTIAEGLSPCVLWIDEIDKAFSNLYSQGDSGTSARVFGTFITW---LSEKTTPVFVVATANTIQNLPSEMLRKGRFDEIFFLDLPNNEERELIFQIHLARIRPKSWQNYNIKQLSLLCNKFSGAEIEQAIVESMHTAFSE 447          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: IQCAL_HUMAN (Putative IQ and AAA domain-containing protein 1-like OS=Homo sapiens GN=IQCA1L PE=5 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 52/208 (25.00%), Postives = 100/208 (48.08%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFG--DAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD-EAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE--ENIDFDYLAGLCEGFTGSDLLE 611
            I+Q +    +L L  P++     L+   + +LL GP G GK ML KA+  E+GA   ++   NL+ K+ G   AQ +V  VF +A  LQP++I+I   +    ++   + + +   + +              RVM++  T+RP   +   + R   +   +  PD   R  + K +++   ++  +++D   LA + +G+T   +L+
Sbjct:  535 IRQNVALYAVLRLGSPDIHIMAPLI---RSILLVGPSGMGKKMLVKAVCTETGANLFDLSPENLLGKYPGRNGAQMMVHIVFKVARLLQPSVIWIGNAEKNFYKKTPKEDKEMDPKRIKKDLTKALRLLTPGDRVMLIGTTSRPQLAEMRGLCRVYERILFMPRPDYASRYVLWKRMIEARGIQPTQHLDISALAKVSDGYTPGHILQ 739          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: IQCA1_HUMAN (IQ and AAA domain-containing protein 1 OS=Homo sapiens GN=IQCA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 49/188 (26.06%), Postives = 95/188 (50.53%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFG--DAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR-----RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD-EAILRRLPQAFEIGMPDRKERAQILKVILK--GEKVEENIDFDYLAGLCEGFTGSDLLEVCK 620
            K +LL GP G GK ML  AI  E+GA   N+  SN+  K+ G    Q ++ AVF +A +LQP++++I++ +    ++     + ++ + L     + + L        + R++++  T RP + + ++  +   +   +  PD   R  + K I++  G  +   ++   LA + +GFT   ++EV K
Sbjct:  569 KSLLLAGPSGVGKKMLVHAICTETGANLFNLSSSNIAGKYPGKNGLQMMLHAVFKVARQLQPSVVWIEDTEKTFYKKVPNAEKMNEPKRLKKHLPQILKL-----LKPDDRILIVGTTRRPFDAELQSFCKVYQKIILVPRPDYASRYVLWKQIIERNGGVLTSALNVSCLAKVTDGFTQGHIVEVVK 751          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: ATAD3_RAT (ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus GN=Atad3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 57/205 (27.80%), Postives = 98/205 (47.80%), Query Frame = 3
Query:   87 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLA-YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF---TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQ---------ILKVILKGEKVEENIDFDY------LAGLCEGFTGSDL--LEVCKQAAYFS 638
            + VL+YGPPGTGKT+ AK +A  SG  +  +     ++    +    +  VF  A    +  ++F+DE D+FL +R T        +  +  A  + F   T   + + M++ A+N+P + D AI  R+ +     +P R+ER +         +LK   +G++  +   FDY      +A L  G +G ++  L V  QA  +S
Sbjct:  345 RNVLMYGPPGTGKTLFAKKLALHSGMDYA-IMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATE------KISEDLRATLNAFLHRTGQHSNKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMYFDKYVLKPATEGKQRLKVAQFDYGKKCSEVAQLTAGMSGREIAQLAVAWQAMAYS 542          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: IQCA1_MOUSE (IQ and AAA domain-containing protein 1 OS=Mus musculus GN=Iqca1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 56/218 (25.69%), Postives = 105/218 (48.17%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDA--QKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEAL--TNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD-EAILRRLPQAFEIGMPDRKER----AQIL--KVILK-GEKVEENIDFDYLAGLCEGFTGSDLLEVCK 620
            ++Q +    ILPL   E+     L+   K +LL GP G GK ML  AI  E+GA   N+   N+  K+ G    Q ++  VF +A +LQP++++I + +    ++     +      +K     L      D   R++++  T+RP + + +   R   +   +  PD   R     ++L  ++IL+ G K+  +++   L+ + +GFT   +++V K
Sbjct:  567 VRQLITLYGILPLGSAEVHERAPLV---KSLLLAGPSGVGKKMLVHAICTETGANLFNLSALNIAGKYPGKTGLQMMIHLVFKVARQLQPSVVWIQDTEKTFYKKVPQAEKRFEPKRLKRYLPKLLKLLKPDD--RILIVGTTHRPFDAELQPFCRVYQKIILVPRPDYASRYGKFHEVLWKEIILRNGGKLTNSLNISCLSKVTDGFTQGQIVQVIK 779          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
YCF46_PORPU3.363e-1124.61Uncharacterized AAA domain-containing protein ycf4... [more]
IQCAL_HUMAN3.363e-1125.00Putative IQ and AAA domain-containing protein 1-li... [more]
IQCA1_HUMAN4.392e-1126.06IQ and AAA domain-containing protein 1 OS=Homo sap... [more]
ATAD3_RAT7.492e-1127.80ATPase family AAA domain-containing protein 3 OS=R... [more]
IQCA1_MOUSE9.785e-1125.69IQ and AAA domain-containing protein 1 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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