BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10264 contig Csv1_Contig10264:368..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.220e-46
Identity = 94/218 (43.12%), Postives = 143/218 (65.60%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKV---EENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K  + E+V+ P+ RP++F+   L GP KG+LL+GPPGTGKT++ K IA +SGA F ++  S+L SKW G+ +K+V A+F++A   QPA+IFIDE+DS L QR   +HE+   +KTEF+   DG TT    R++V+ ATNRP E+DEA  RRL +   I +P+   R QI+  ++  E+    EE I  + +    + F+G+D+ ++C++A+   IR L
Sbjct:  410 KATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI--EQIVQQSDAFSGADMTQLCREASLGPIRSL 623          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.087e-45
Identity = 94/218 (43.12%), Postives = 147/218 (67.43%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDY---LAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K    E +I+PLRRP+LF+  +   P +GVLL+GPPGTGKT++AK+IA ++ A F ++  S+L SKW GDA+KLV  +F++A   QPAIIFIDEVDS L +R  +++E+   +K EF+   DG  +++  RV+V+ ATNRP ELDEA+ RR  +   + +P R+ R +I++ ++   +V+ N+D      LA L +G++G+D+  +C+ A+   +R L
Sbjct:  259 KSTFLEAIIMPLRRPDLFTGVRC--PPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLI--HQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSL 472          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45
Identity = 100/221 (45.25%), Postives = 142/221 (64.25%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA-VFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDF-----DYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K+AL E VILP   P LFS   L  P +G+LL+GPPG GKT+LA+A+A E G+ +F+NV  ++L SKW GDA+K+V A+F +A   QP IIFIDE+DS L +R   + E    MKTEF+   DG  + ++ R++V+ ATNRP ELD AILRR P+   I +P+   R +++  +L  EK + + D        LA    G++ SDL+ +C++AA   IR+L
Sbjct:  187 KRALEETVILPTVNPSLFSG--LRQPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCERNEKETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILRRFPKRILIDVPNAAARLKLIMSLL--EKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVPIRDL 403          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.695e-43
Identity = 97/219 (44.29%), Postives = 136/219 (62.10%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD-HEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E V+LP+  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS  G+R TSD HEA   +K+E +   DG      + D +  VMVLAATN P ++DEA+ RRL +   I +P  K RA++LK+ L+   V  ++D    A   EG++G+D+  VC+ A+  ++R
Sbjct:  215 KKLLREAVVLPMWMPDFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMR 431          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.160e-42
Identity = 96/228 (42.11%), Postives = 146/228 (64.04%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT------DQN----ARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K +L E V+ P  RP+LF    L  P +G+LL+GPPGTGKTM+AKA+A ES + F +V  S+L+SK+ G+++KLV A+F +A KL P+IIFIDE+DS L  R  +++E+   +KTE +  W   ++      D+N    +RV+VL ATN P  +D+A  RR  +   I +PD + R   LK ++  +K   +++D++ +  + EGF+GSDL  + K+AA   IR+L D
Sbjct:  480 KNSLKEAVVYPFLRPDLFKG--LREPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDLGD 705          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.821e-42
Identity = 96/216 (44.44%), Postives = 137/216 (63.43%), Query Frame = 3
Query:    3 IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGFTTD-QNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            +KQ L+E V LPL  PE F    L  P K ++L GPPGTGKT++A+AIA ES + F  V  ++L SKW GD++K+V  +F LA    P+IIFIDE+D+  GQR  S +HEA   +K+EF+   DG      + RV VLAATN P ELDEA+ RR  +   I +PD   R ++++  ++G    + I++D LA   EGF+G+D++ +C+ AA   +R
Sbjct:  201 VKQVLHEAVTLPLLVPEFFQG--LRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEHEASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLR 414          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 95/223 (42.60%), Postives = 139/223 (62.33%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD-HEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TSD HEA   +K+E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K RA++LK+ L+  +++ +I  + +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  217 KKLLREAVVLPMWMPDFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDASLMAMRRRIN 437          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 95/223 (42.60%), Postives = 139/223 (62.33%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD-HEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TSD HEA   +K+E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K RA++LK+ L+  +++ +I  + +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  217 KKLLREAVVLPMWMPDFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRIN 437          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 95/223 (42.60%), Postives = 139/223 (62.33%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD-HEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TSD HEA   +K+E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K RA++LK+ L+  +++ +I  + +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  217 KKLLREAVVLPMWMPDFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRIN 437          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 95/223 (42.60%), Postives = 139/223 (62.33%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD-HEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TSD HEA   +K+E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K RA++LK+ L+  +++ +I  + +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  217 KKLLREAVVLPMWMPDFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRIN 437          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
FIGL1_HUMAN3.220e-4643.12Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
FIGL1_DROME2.087e-4543.12Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
SPAST_BRUMA7.931e-4545.25Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
KATL1_DANRE9.695e-4344.29Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
TBP6_YEAST2.160e-4242.11Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
MEI1_CAEEL2.821e-4244.44Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
KATL1_RABIT8.207e-4242.60Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN8.207e-4242.60Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA8.207e-4242.60Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN8.207e-4242.60Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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