BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10264 contig Csv1_Contig10264:368..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 94/223 (42.15%), Postives = 139/223 (62.33%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD-HEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TSD HEA   +K+E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K RA++LK+ L+  +++ +I  + +A   EG++G+D+  +C+ A+  ++R  ++
Sbjct:  215 KKLLREAVVLPMWMPDFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRIN 435          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 93/223 (41.70%), Postives = 139/223 (62.33%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD-HEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TSD HEA   +K+E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K RA++LK+ L+  +++ ++  + +A   EG++G+D+  +C+ A+  ++R  ++
Sbjct:  215 KKLLREAVVLPMWMPDFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRIN 435          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            L E+V LPL++PE+F    +  P KGVLLYGPPGTGKTMLAKA+A ES AVFI+V  S    K+ G+  ++V  +F +A +  P+IIFIDE+D+ +G +R    TS    +     + +A  DGF    N  V ++AATNR   LD A+LR  R  +  E+ +PD + R +I  + LK  KVE+NI+ + L+ L EGF+G+D+  VC +AAY +IR+
Sbjct:  146 LREVVELPLKKPEIFREIGV-EPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDA-IGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDN--VKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            L E+V LPL++PE+F    +  P KGVLLYGPPGTGKTMLAKA+A ES AVFI+V  S    K+ G+  ++V  +F +A +  P+IIFIDE+D+ +G +R    TS    +     + +A  DGF    N  V ++AATNR   LD A+LR  R  +  E+ +PD + R +I  + LK  KVE+NI+ + L+ L EGF+G+D+  VC +AAY +IR+
Sbjct:  146 LREVVELPLKKPEIFREIGV-EPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDA-IGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDN--VKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            L E+V LPL++PE+F    +  P KGVLLYGPPGTGKTMLAKA+A ES AVFI+V  S    K+ G+  ++V  +F +A +  P+IIFIDE+D+ +G +R    TS    +     + +A  DGF    N  V ++AATNR   LD A+LR  R  +  E+ +PD + R +I  + LK  KVE+NI+ + L+ L EGF+G+D+  VC +AAY +IR+
Sbjct:  146 LREVVELPLKKPEIFREIGV-EPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDA-IGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDN--VKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            L E+V LPL++PE+F    +  P KGVLLYGPPGTGKTMLAKA+A ES AVFI+V  S    K+ G+  ++V  +F +A +  P+IIFIDE+D+ +G +R    TS    +     + +A  DGF    N  V ++AATNR   LD A+LR  R  +  E+ +PD + R +I  + LK  KVE+NI+ + L+ L EGF+G+D+  VC +AAY +IR+
Sbjct:  146 LREVVELPLKKPEIFREIGV-EPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDA-IGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDN--VKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            L E+V LPL++PE+F    +  P KGVLLYGPPGTGKTMLAKA+A ES AVFI+V  S    K+ G+  ++V  +F +A +  P+IIFIDE+D+ +G +R    TS    +     + +A  DGF    N  V ++AATNR   LD A+LR  R  +  E+ +PD + R +I  + LK  KVE+NI+ + L+ L EGF+G+D+  VC +AAY +IR+
Sbjct:  146 LREVVELPLKKPEIFREIGV-EPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDA-IGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDN--VKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            L E+V LPL++PE+F    +  P KGVLLYGPPGTGKTMLAKA+A ES AVFI+V  S    K+ G+  ++V  +F +A +  P+IIFIDE+D+ +G +R    TS    +     + +A  DGF    N  V ++AATNR   LD A+LR  R  +  E+ +PD + R +I  + LK  KVE+NI+ + L+ L EGF+G+D+  VC +AAY +IR+
Sbjct:  146 LREVVELPLKKPEIFREIGV-EPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDA-IGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDN--VKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.388e-41
Identity = 98/217 (45.16%), Postives = 138/217 (63.59%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            L E+V LPL+ PE+F    +  P KGVLLYGPPGTGKTMLAKA+A ES AVFI+V  S    K+ G+  ++V  +F +A +  P+IIFIDE+D+ +G +R    TS    +     + +A  DGF  D    V ++AATNR   LD A+LR  R  +  E+ +PD K R +I  + LK  K+E+NI+ + L+ L EGF+G+D+  VC +AAY +IR+
Sbjct:  146 LREVVELPLKNPEIFREIGV-EPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDA-IGAKRIDIGTSGEREIQRTLMQLLAELDGF--DPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41
Identity = 91/218 (41.74%), Postives = 140/218 (64.22%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENI---DFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            K+AL E V+LP++ P+LFSHG+   P  G+LLYGPPGTGK+ LAKA+A E+G+ F ++  S+L+SKW G++++LV  +F +A + +P+IIFIDE+DS  G R   + E+   +KTEF+   +G   D++  V+VL ATN P  LD AI RR  +   I +P+   RA++ +  L   K+   +   DF  LA + +G++GSD+  V + A    +R +
Sbjct:  138 KEALKETVLLPIKLPQLFSHGRK--PWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGVGKDESG-VLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFE--LNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRI 350          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
KATL1_RAT1.072e-4142.15Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_MOUSE1.072e-4141.70Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PSMR_SULIY1.828e-4145.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.828e-4145.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM1.828e-4145.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.828e-4145.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK1.828e-4145.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA1.828e-4145.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULSO2.388e-4145.16Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
VPS4_SCHPO3.119e-4141.74Suppressor protein of bem1/bed5 double mutants OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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