BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10264 contig Csv1_Contig10264:368..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41
Identity = 92/226 (40.71%), Postives = 139/226 (61.50%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL------KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ + E V+ P+R P+LF+   +L P KG+LLYGPPGTGKT+LAKA+A E    F N+  S ++SKW GD++KLV  +F LA    P+ IF+DE++S + QR T    +HE    MKTE +   DG     +  V VLAA+N P ELD A+LRRL +   + +P ++ R  +++  L       G ++  ++D+  L    +G++GSD+  VCK+AA   +R++ D
Sbjct:  267 KRLVKEAVVYPIRYPQLFTG--ILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDL-VFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFD 489          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.073e-41
Identity = 94/223 (42.15%), Postives = 137/223 (61.43%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD-HEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TSD HEA   +K+E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K R  +LK+ L+  +++ +I  + +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  217 KKLLREAVVLPMWMPDFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRIN 437          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 5.320e-41
Identity = 95/226 (42.04%), Postives = 141/226 (62.39%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQI----LKVILKGEKVEENIDFDY--LAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            KQ + E V+ P+R P+LF+   +L P KG+LLYGPPGTGKT+LAKA+A E    F N+  S ++SKW GD++KLV  +F LA    P+ IF+DE++S + QR T+   +HE    MKTE +   DG    ++  V VLAA+N P ELD A+LRRL +   + +P R+ R  +    L  + K   +E + + +Y  L+   EG++GSD+  VC++AA   +R++ D
Sbjct:  263 KQLVKEAVVYPIRYPQLFTG--ILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDL-VFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFD 485          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40
Identity = 92/223 (41.26%), Postives = 137/223 (61.43%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  PE F    +  P KGVL+ GPPGTGKT+LAKA+A E    F NV  S L SK+ G+++KLV  +F +A    PA IFIDE+DS   +R TS +HEA   MK E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K R ++L++ L+  ++ ++++   +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  218 KKLLQEAVVLPMWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIE 438          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40
Identity = 92/223 (41.26%), Postives = 137/223 (61.43%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  PE F    +  P KGVL+ GPPGTGKT+LAKA+A E    F NV  S L SK+ G+++KLV  +F +A    PA IFIDE+DS   +R TS +HEA   +K E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K R ++L++ L+  ++ +++D   +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  218 KKLLKEAVVLPMWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIE 438          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40
Identity = 92/223 (41.26%), Postives = 137/223 (61.43%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  PE F    +  P KGVL+ GPPGTGKT+LAKA+A E    F NV  S L SK+ G+++KLV  +F +A    PA IFIDE+DS   +R TS +HEA   +K E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K R ++L++ L+  ++ +++D   +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  218 KKLLKEAVVLPMWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIE 438          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40
Identity = 93/222 (41.89%), Postives = 134/222 (60.36%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGF----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  PE F    +  P KGVL+ GPPGTGKT+LAKA+A E    F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TS +HEA   +K E +   DG       D +  VMVLAATN P ++DEA+ RRL +   I +P  K R  +LK+ LK   +  +++ D +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  213 KKLLKEAVVLPMWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIE 432          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.640e-40
Identity = 92/219 (42.01%), Postives = 138/219 (63.01%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT-SDHEALTNMKTEFMALWDGFT-----TDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 644
            K+ L E V+LPL  P+ F    +  P KGVL+ GPPGTGKTMLAKA+A E G  F NV  ++L SK+ G+++KLV  +F +A    P+ IFIDE+DS   +R T S+HEA   +K+E +   DG +      + +  VMVLAATN P ++DEA+ RRL +   I +P+   R Q+L++ LK   + ++ID   +A   +G++G+D+  VC+ A+  ++R
Sbjct:  243 KRLLEEAVVLPLWMPDYFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMR 459          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 92/223 (41.26%), Postives = 135/223 (60.54%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  PE F    +  P KGVL+ GPPGTGKT+LAKA+A E    F NV  S L SK+ G+++KLV  +F +A    P  IFIDE+DS   +R TS +HEA   +K E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K R ++L++ LK  ++  ++D   +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  213 KKLLKEAVVLPMWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDEIDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRRRIE 433          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.882e-40
Identity = 91/223 (40.81%), Postives = 137/223 (61.43%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGF-----TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            K+ L E V+LP+  PE F    +  P KGVL+ GPPGTGKT+LAKA+A E    F NV  S L SK+ G+++KLV  +F +A    PA IFIDE+DS   +R TS +HEA   +K E +   DG        D +  VMVLAATN P ++DEA+ RRL +   I +P  K R ++L++ L+  ++ ++++   +A   EG++G+D+  VC+ A+  ++R  ++
Sbjct:  218 KKLLQEAVVLPMWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIE 438          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
KATL2_XENTR3.119e-4140.71Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
KATL1_SORAR4.073e-4142.15Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL2_HUMAN5.320e-4142.04Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
KTNA1_MOUSE2.021e-4041.26Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
KTNA1_MACFA2.021e-4041.26Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN2.021e-4041.26Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KTNA1_DANRE2.021e-4041.89Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
KTNA1_STRPU2.640e-4042.01Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
KTNA1_SALSA4.503e-4041.26Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_RAT5.882e-4040.81Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
back to top