BQ623365

Overview
NameBQ623365
Unique NameBQ623365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTN---NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 319
            GG NPPHTHPR TE  +V  GTLLVG VT+N   N  FSKVL PG VF+ P  ++HFQ+NVG   A       +QNPG       +F + P +  E+L K+F++  +V
Sbjct:  106 GGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNV 213          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.983e-21
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTT--NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G NPPHTHPR TE   V  GTL VG VT+  NNT FSKVL  G VF+ P  L+HFQ N   ++PA  I   ++QNPG       +F + PP+ ++VL K+F+V
Sbjct:  104 GENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQV 206          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.983e-21
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTT--NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G NPPHTHPR TE   V  GTL VG VT+  NNT FSKVL  G VF+ P  L+HFQ N   ++PA  I   ++QNPG       +F + PP+ +EVL K+F+V
Sbjct:  105 GQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQV 207          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.983e-21
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN--NTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G+NPPHTHPR TE   V  GTL VG VT+N  N  FSKVL  G VF+ P+ L+HFQ N+  ++PA      ++QNPG+      +F + PP+ +++L K+F+V
Sbjct:  107 GLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQV 209          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.983e-21
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN---NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 319
            G NPPHTHPR TE  ++  GTL VG V++N   N  F+KVL PG VF+ P  ++HFQ+N+G  PA      ++QN GV     T+F +TPP+  ++L ++F++  +V
Sbjct:  105 GQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNV 211          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.983e-21
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN---NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 319
            G NPPHTHPR TE  ++  GTL VG V++N   N  F+KVL PG VF+ P  ++HFQ+N+G  PA      ++QN GV     T+F +TPP+  ++L ++F++  +V
Sbjct:  105 GQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNV 211          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.983e-21
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN---NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 319
            G NPPHTHPR TE  ++  GTL VG V++N   N  F+KVL PG VF+ P  ++HFQ+N+G  PA      ++QN GV     T+F +TPP+  ++L ++F++  +V
Sbjct:  106 GQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNV 212          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.794e-21
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTT--NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G NPPHTHPR TE   V  GTL VG VT+  NNT FSKVL  G VF+ P  L+HFQ N   ++PA  +   ++QNPG       +F + PP+ +++L K+F+V
Sbjct:  105 GENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQV 207          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.794e-21
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN---NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 319
            G NPPHTHPRG+E  ++  GTL VG V++N   N  F+KVL PG VF+ P  ++HFQLN+G  PA      ++QN GV     T+F + PP+  E+L ++F++  +V
Sbjct:  105 GQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANV 211          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.873e-21
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN--NTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G+NPPHTHPR TE   V  GTL VG VT+N  N   SKVL  G VF+ P  L+HFQ N   ++PA  I   ++QNPGV      +F + PP+ +++L K+F+V
Sbjct:  107 GLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQV 209          
The following BLAST results are available for this feature:
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GL17_ARATH2.335e-2147.22Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL88_ORYSJ3.983e-2149.51Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL86_ORYSJ3.983e-2150.49Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL81_ORYSJ3.983e-2146.60Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL117_ARATH3.983e-2143.93Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH3.983e-2143.93Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL114_ARATH3.983e-2143.93Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL87_ORYSJ6.794e-2147.57Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL116_ARATH6.794e-2144.86Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL82_ORYSJ8.873e-2147.57Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00456 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00456 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623365 ID=BQ623365; Name=BQ623365; organism=Citrus sinensis; type=EST; length=483bp
TGTCGGCGGAATAAACCCGCCTCATACGCATCCTCGTGGAACTGAGGCTG
GTATTGTTACCAGAGGAACGTTGCTCGTAGGTATAGTAACAACTAATAAT
ACCTTTTTCTCAAAGGTCTTGACTCCCGGGAAGGTGTTCTTAATTCCTAG
AGCACTGGTTCACTTCCAACTAAATGTTGGAAACGAGCCGGCCACCTTTA
TACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGATTCAATCGGTACT
ATATTTGACGCAACGCCTCCCGTTCCCAATGAAGTGTTGACCAAATCTTT
CCGAGTGGGTGATGATGTGATCAATGCCATCAGAGCAGCCCGAGCCCAAT
CAAGCTAGATTAACATCCTCGATGTTCGATCGATATCCTTTATGTCTCAC
AACTAATGGATGAGATCTGTTGTGTGTACTAATTATTAAATAAAGAATAA
AGCTGAGACAACCAATAATTATAGAATAAAGAA
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