BQ623365

Overview
NameBQ623365
Unique NameBQ623365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 2
Query:   11 INPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFR 304
            +NPPHTHPR  E  ++  G L VG V T N  +++ L  G +F+ P+ +VHFQ N GN+PA  +  F +   G+     T+F     + + VL KSF+
Sbjct:  100 LNPPHTHPRSAELLLLVDGALSVGFVDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSFK 195          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN---TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSF 301
            GG  PPH HPR ++  +V +G L VG V++N+   T FSK+L PG VF  P  LV F  N G   A  I +  +Q+PGV      +F + P +  ++L K+F
Sbjct:  106 GGQLPPHIHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGSNPLIDPKLLAKAF 207          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.765e-14
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIF 256
            G  P H+HPR +E   V +G +  G V TNN  F  VL  G VF+ P+ L+HF L+ G EPAT    +N+QNPGV  +IG +F
Sbjct:  101 GSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVV-NIGEVF 182          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.810e-13
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 232
            GG+ P HTHP  +E  +V +GT++ G V ++NT + K L  G + + P+ L+HFQ+N G+ PA   P F++ +PG+
Sbjct:   95 GGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGL 170          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN-EPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV-GDDV 319
            G+ PPH HPR +E  +   G LLVG V T+   F++ L PG+ F+ P+ L+HF  N+     A  +   ++QNPG      + F + PP   EVL  ++ + G DV
Sbjct:  103 GVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDINGQDV 208          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 232
            GG+ P HTHP  +E  +V +GT++ G V ++NT + K L  G + + P+ L+HFQ+N G  PA   P F++ +PG+
Sbjct:   95 GGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGL 170          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.162e-12
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTNN-TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIF 256
            GIN PHTHPR TE   + +G    G    N  TF   +L  G   + P+  +HF++N+  EPA F+  FN ++PGV  +  + F
Sbjct:  105 GINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFF 188          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTT--NNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG---VSDSIGTIFDATPPVPNEVLTKS 298
            GG+ PPH HPR +E  +V  G +  G VT+  ++   +KVL  G VF +P+ LVHF  N G+EPA      ++QNPG   V+D++        P+P +++ K+
Sbjct:  113 GGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADAL-----LAAPLPVDLVAKT 210          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.414e-12
Identity = 39/103 (37.86%), Postives = 52/103 (50.49%), Query Frame = 2
Query:    2 VGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTK--SFR 304
            V G   PH+HPR +E   V  G+++ G   T    F K L  G VF+ PR LVHF +N G   AT   + N+QNPGV      +F     V   ++ +  SFR
Sbjct:  104 VSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMARMLSFR 206          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 232
            G+ P HTHP  +E   V  G++  G V++ N  + + L PG+V + P+ L+HFQ+N G   A+ +  FN+ NPG+
Sbjct:   95 GVIPMHTHPGASEVLFVLTGSITAGFVSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGL 169          
The following BLAST results are available for this feature:
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GL93_ORYSJ1.621e-1438.78Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL12_ARATH2.117e-1440.20Putative germin-like protein subfamily 1 member 2 ... [more]
GL34_ARATH2.765e-1446.99Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
AB19B_PRUPE6.810e-1340.79Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL11_ARATH8.894e-1336.79Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
AB19A_PRUPE8.894e-1340.79Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
SR1B_PHYPO1.162e-1238.10Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]
GL51_ORYSJ1.517e-1237.86Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL111_ORYSJ4.414e-1237.86Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL31_ARATH9.833e-1238.67Germin-like protein subfamily 3 member 1 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00456 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00456 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623365 ID=BQ623365; Name=BQ623365; organism=Citrus sinensis; type=EST; length=483bp
TGTCGGCGGAATAAACCCGCCTCATACGCATCCTCGTGGAACTGAGGCTG
GTATTGTTACCAGAGGAACGTTGCTCGTAGGTATAGTAACAACTAATAAT
ACCTTTTTCTCAAAGGTCTTGACTCCCGGGAAGGTGTTCTTAATTCCTAG
AGCACTGGTTCACTTCCAACTAAATGTTGGAAACGAGCCGGCCACCTTTA
TACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGATTCAATCGGTACT
ATATTTGACGCAACGCCTCCCGTTCCCAATGAAGTGTTGACCAAATCTTT
CCGAGTGGGTGATGATGTGATCAATGCCATCAGAGCAGCCCGAGCCCAAT
CAAGCTAGATTAACATCCTCGATGTTCGATCGATATCCTTTATGTCTCAC
AACTAATGGATGAGATCTGTTGTGTGTACTAATTATTAAATAAAGAATAA
AGCTGAGACAACCAATAATTATAGAATAAAGAA
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