BQ623365

Overview
NameBQ623365
Unique NameBQ623365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 2
Query:    2 VGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKS 298
            VGG+ P HTHP  +E  IV +GT+  G V ++NT + + L  G + + P+ L+HFQ+N G  PA     F + +PG+      +F     +P EV+ ++
Sbjct:   99 VGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALF--KNDLPTEVIAQT 195          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.677e-11
Identity = 31/84 (36.90%), Postives = 43/84 (51.19%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTNNT-FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIF 256
            GIN PHTHPR TE   +  G    G    N   F    L  G   + P+  +HF++N+  EPA F+  FN ++PGV  +  + F
Sbjct:  118 GINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.737e-11
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 2
Query:    2 VGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 232
            VGG+ P HTHP  +E   VT+GT+  G +T++ NT +++ L  G + + P+ L+H+Q N G   A  +  F+  NPG+
Sbjct:   97 VGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGL 174          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.880e-11
Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 232
            G+ P HTHP  +E   V  G++  G +++ N+ + + L PG+V + P+ L+HFQ+N G  PA  +  F++ +PG+
Sbjct:   94 GVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGL 168          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 232
            GG+ P HTHP  +E  +V +GT+  G +++ N  + K L+ G   + P+ L+HFQLN G  PA     F + +PG+
Sbjct:   97 GGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGL 172          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIV--TTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNE-PATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKS 298
            G +NPPH HPR +E  +V +G LLVG+V    N T +++ L  G +F+ P+ +VHFQ N G +  A     F +  PG       +F +   + + +L KS
Sbjct:   94 GTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS--GIDDTILDKS 192          
The following BLAST results are available for this feature:
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ABP20_PRUPE9.833e-1235.35Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
SR1A_PHYPO1.677e-1136.90Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
GL814_ORYSJ3.737e-1138.46Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GLP1_BRANA4.880e-1136.00Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GLP1_SINAL8.325e-1138.16Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL91_ORYSJ8.325e-1135.64Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00456 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00456 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623365 ID=BQ623365; Name=BQ623365; organism=Citrus sinensis; type=EST; length=483bp
TGTCGGCGGAATAAACCCGCCTCATACGCATCCTCGTGGAACTGAGGCTG
GTATTGTTACCAGAGGAACGTTGCTCGTAGGTATAGTAACAACTAATAAT
ACCTTTTTCTCAAAGGTCTTGACTCCCGGGAAGGTGTTCTTAATTCCTAG
AGCACTGGTTCACTTCCAACTAAATGTTGGAAACGAGCCGGCCACCTTTA
TACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGATTCAATCGGTACT
ATATTTGACGCAACGCCTCCCGTTCCCAATGAAGTGTTGACCAAATCTTT
CCGAGTGGGTGATGATGTGATCAATGCCATCAGAGCAGCCCGAGCCCAAT
CAAGCTAGATTAACATCCTCGATGTTCGATCGATATCCTTTATGTCTCAC
AACTAATGGATGAGATCTGTTGTGTGTACTAATTATTAAATAAAGAATAA
AGCTGAGACAACCAATAATTATAGAATAAAGAA
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