BQ623374

Overview
NameBQ623374
Unique NameBQ623374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13740 contig Csv1_Contig13740:127..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.646e-13
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  222 KTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 455
            K VV+D    WCGPC+ IAP   ++AKK   VIFLK+D + E K+++ E  +  +PTF  +KD K V  V GAK E+L
Sbjct:   35 KLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVD-ELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEEL 111          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 39/105 (37.14%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  153 ATVGEVTEVNKDTFWPI-VKAAGD--KTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLV 458
            A  GEV   +    W   +KAA +  K +V+D    WC PC+ IAP F +LAKK+ DV+F K+D ++ N ++A+E  ++ +PTF  +K+ ++ + V GA  E+++
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELN-TVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEII 105          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 3
Query:  228 VVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 455
            +V+D    WCGPC+ IAP   ELAKK  +V FLK+D + E K++A E  +  +PTF  LK+ K++ +V GAK ++L
Sbjct:   31 IVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVD-ELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDEL 105          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  201 IVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSD-VIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA---KLEDLVFA 464
            + KA+G K VVLD +  WCGPCK+I+PK  EL+ +Y+D V+ LK+D + E + +A E  I  +PTF  LK+   V+E  GA   +LED++ A
Sbjct:   15 LTKASG-KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVD-ECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKA 104          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  222 KTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAI 467
            K +V+D    WCGPC+VI P   ELAKK+  V F K+D + + K +A+E  +  +P+F ILK+ + V+ + GA+ ++L+  I
Sbjct:   28 KLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVD-DLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKI 108          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  168 VTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 440
            VT++   + +    A+GDK VV+D +  WCGPCK+IAP  ++ A++YSD  F KLD + E   +A++  +  +PT    K  K V  V GA
Sbjct:    2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVD-EVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGA 91          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  228 VVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAV 476
            VV+D +  WCGPCK IAP  ++ A+ Y+D  F ++D + E   +A ELGIR +PTF + KD + V +V GA    L   I A+
Sbjct:   27 VVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVD-ELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKAL 108          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  180 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 455
            +K+ F  ++K AG+K V +D    WCGPC+ + P F  L+ K+ DVIFL++D  ++ + L ++  +  +PTF+  K+ + V E +GA +E L
Sbjct:  452 DKEEFEEVLKDAGEKLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVD-TEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKL 542          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  162 GEVTEVNKDTFW-PIVKAAGD--KTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 455
            GEV   +    W   VK A +  K +V+D    WC PC+ IAP F E+AKK+++V+F K+D + E +++A+E  +  +PTF  +K+  ++  V GA  +++
Sbjct:    5 GEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVD-ELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEI 104          
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  177 VNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 455
            ++K+ F   +K AG++ V +D    WCGPC+ I P F  L+ K+ DV+FL++D +   + + +E  I  VPTF+  K  + V E+ GA  E L
Sbjct:  454 LSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDAD-NCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKL 545          
The following BLAST results are available for this feature:
BLAST of BQ623374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
TRXH1_TOBAC3.646e-1347.44Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH3_ARATH4.761e-1337.14Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_RICCO8.122e-1346.05Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
THIO2_DROYA1.061e-1245.65Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
TRXH_FAGES1.809e-1240.24Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRX2_YEAST1.809e-1239.56Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_EMENI1.809e-1243.37Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TXND2_RAT3.086e-1236.96Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
TRXH5_ARATH3.086e-1235.64Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TXND2_HUMAN4.031e-1237.63Thioredoxin domain-containing protein 2 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00465 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00465 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623374 ID=BQ623374; Name=BQ623374; organism=Citrus sinensis; type=EST; length=667bp
AGATCACAGCCTCTGCTTTCTCAGCGGGAGTCTCAAGCTCAAGAACCGGC
TCTTACTCCTCGTCATTAGTAGCGAAGAAGGCGAATAAGAAGAGCAATAA
GCAGCTAAACGGCGGTGTTTTCACGGTGAGATCGAGCTTGGAGATTGCGG
GGGCCACAGTGGGAGAGGTCACTGAAGTAAATAAGGATACTTTTTGGCCC
ATCGTTAAGGCCGCCGGTGATAAGACTGTTGTTCTTGATATGTACACTCA
ATGGTGTGGTCCTTGTAAAGTGATAGCTCCAAAATTTCAAGAATTAGCCA
AAAAGTACTCCGATGTTATATTTCTAAAGCTTGATTGCAACCAAGAGAAC
AAGTCATTGGCGAAAGAGCTTGGAATAAGGGTTGTTCCTACTTTCAAGAT
TCTGAAAGACAATAAGGTTGTAAAGGAAGTGACCGGGGCCAAATTGGAAG
ACCTAGTTTTCGCCATTGATGCTGTTAGATCCGGTTGAAAATTCTTTCCT
ATTATTTCTCCTGTAAACTATAAGCAATATGATCAGCAATGTGTACGTGC
TTGAGAATAATTGATTGGTCCACTTGTATGTATTTATGTATGTTAAACTG
TAGTTGAGATGAAGGAAGCAATTGCAATTATATTCTCCTAAAAACAAAAG
TTTTTATTCGTACTTTC
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