BQ623388

Overview
NameBQ623388
Unique NameBQ623388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9343 contig Csv1_Contig9343:189..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 DPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATPLDQ-PVDMSESPG 255
            +P+ W+NP  F+PERFL      A V+  G  F  +PFG GRRSCPG   AL +L +TL RL+ +FEL  P  Q  +D SE  G
Sbjct:  406 NPAHWKNPEEFRPERFLE---EEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTSEKGG 486          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: C71C2_MAIZE (Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    4 RDPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATP-LDQPVDMSESPGLTIPKATPLKVLLSPRL 306
            RD + WE P  F PERF+   GA  DV ++G+    IPFGSGRR CPG +     + + LA L++ F+   P     V M ES GLT+ +    K+LL PR+
Sbjct:  436 RDRTTWEKPEEFMPERFVQEPGA-VDVHMKGKDLRFIPFGSGRRICPGMNFGFATMEVMLANLMYHFDWEVPGSGAGVSMEESFGLTLRRKE--KLLLVPRI 534          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: C71BA_ARATH (Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=CYP71B10 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    4 RDPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATPLDQPVD---MSESPGLTIPK 270
            RDP +W++P  F PERF+       D+DV+GQ +EL+PFGSGRR CP     +  +   LA LL+ F+   P    V+   M E+ GLT  K
Sbjct:  403 RDPEIWKDPEEFLPERFMD-----CDIDVKGQDYELLPFGSGRRICPAVYMGITTVEFGLANLLYHFDWKLPEGVAVEDIYMDEASGLTSHK 489          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: C71B6_ARATH (Cytochrome P450 71B6 OS=Arabidopsis thaliana GN=CYP71B6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    4 RDPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATPLDQPVDMSESPGLTIPKATPLKVL 291
            R+P VW++P  F PERF+      ++V+ +G  FEL+PFGSGRR CP     L  +  TLA LL+ F+      + V + E+PGLT  +  PL ++
Sbjct:  406 RNPDVWKDPDEFIPERFVD-----SNVETKGTSFELLPFGSGRRGCPAMYVGLSTVEYTLANLLYHFDWKA--TEEVSVEEAPGLTSHRKHPLHLV 494          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 DPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATPLDQ-PVDMSESPG 255
            +P+ W+NP  F+PERFL      A V+  G  F  +PFG GRRSCPG   AL +L +TL RL+ +FEL  P  Q  +D SE  G
Sbjct:  406 NPAHWKNPEEFRPERFLE---EGAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTSEKGG 486          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: C80B1_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    4 RDPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATPLDQPVD---MSESPGLTIPKATPLKVLLSPRL 306
            RDP  W +P  F PERFL     ++ VD RG  F LIPFG+GRR CPG   A Q + L +A  + + +   P    VD   + E  GLT+ K  PL ++   R+
Sbjct:  389 RDPKTWTDPLTFSPERFL-----NSSVDFRGNDFSLIPFGAGRRICPGLPIANQFIALLVATFVQNLDWCLPNGMSVDHLIVEEKFGLTLQKEPPLFIVPKSRV 487          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: C76A2_SOLME (Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    4 RDPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATP---LDQPVDMSESPGLTIPKATPLKVL 291
            RDP  W++P +F+PERFL      + +DV+GQ + LIPFG+GRR C G     +++H  L  LL  FE   P     + ++M  S G+T  K   LKV+
Sbjct:  408 RDPECWDDPMSFKPERFLG-----SKIDVKGQHYGLIPFGAGRRMCVGLPLGHRMMHFALGSLLREFEWELPDGVSPKSINMDGSMGVTARKRDSLKVI 501          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: C71E1_SORBI (4-hydroxyphenylacetaldehyde oxime monooxygenase OS=Sorghum bicolor GN=CYP71E1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    4 RDPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATP---LDQPVDMSESPGLTIPKATPLKVL 291
            RDP+ W  P  F P+RF+      +DVD  G  FELIPFG+GRR CPG +     +  TLA LL+ ++ A P     + V M E+  LT  + TPL V+
Sbjct:  428 RDPASWPAPDEFNPDRFVG-----SDVDYYGSHFELIPFGAGRRICPGLTMGETNVTFTLANLLYCYDWALPGAMKPEDVSMEETGALTFHRKTPLVVV 521          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 DPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATPLDQ-PVDMSESPG 255
            +P++W+ P  F+PERFL      A V+  G  F  +PFG GRRSCPG   AL +L +T+ RL+ +FEL  P  Q  +D SE  G
Sbjct:  406 NPALWKKPEEFRPERFLE---EEAHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKIDTSEKGG 486          
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Match: C80B2_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Eschscholzia californica GN=CYP80B2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    4 RDPSVWENPSAFQPERFLPGHGAHADVDVRGQQFELIPFGSGRRSCPGASSALQVLHLTLARLLHSFELATPLDQPVD---MSESPGLTIPKATPLKVLLSPRL 306
            RDP  W +P  F PERFL     ++ VD RG  F LIPFG+GRR CPG   A Q + L +A  + + +   P    VD   + E  GLT+ K  PL ++   R+
Sbjct:  390 RDPKTWIDPLTFSPERFL-----NSSVDFRGNDFSLIPFGAGRRICPGLPIANQFIALLVATFVQNLDWCLPNGMSVDHLIVEEKFGLTLQKEPPLFIVPKSRV 488          
The following BLAST results are available for this feature:
BLAST of BQ623388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
TCMO_POPTM7.550e-1447.62Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
C71C2_MAIZE7.550e-1442.16Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 S... [more]
C71BA_ARATH7.550e-1442.39Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=C... [more]
C71B6_ARATH9.860e-1440.63Cytochrome P450 71B6 OS=Arabidopsis thaliana GN=CY... [more]
TCMO_POPKI1.288e-1347.62Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
C80B1_ESCCA1.288e-1340.38(S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (F... [more]
C76A2_SOLME1.288e-1340.40Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76... [more]
C71E1_SORBI1.288e-1342.424-hydroxyphenylacetaldehyde oxime monooxygenase OS... [more]
TCMO_PEA2.197e-1345.24Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
C80B2_ESCCA2.197e-1340.38(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00479 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00479 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623388 ID=BQ623388; Name=BQ623388; organism=Citrus sinensis; type=EST; length=520bp
CAAAGGGATCCAAGTGTTTGGGAAAATCCATCGGCCTTCCAACCAGAGAG
ATTTCTCCCAGGCCATGGCGCCCATGCAGATGTTGATGTTAGGGGCCAAC
AATTTGAACTCATTCCTTTTGGCTCTGGCCGACGTTCTTGCCCAGGTGCA
TCATCTGCTCTCCAGGTCCTTCACCTCACGCTTGCTCGACTCCTTCATTC
ATTTGAACTAGCAACCCCATTGGATCAGCCTGTTGACATGTCAGAGTCTC
CTGGCTTAACCATACCGAAGGCCACCCCATTGAAGGTTCTCCTTTCTCCT
CGCCTCCTCCCTGCCAACCCCTATGGCTTTTGAGTTTGAGCAATTATTAA
ATCCAGCAAGCAAAGCTCGAAGTGCTTAATAATTATTAGCTTATTGTTTA
CTGAATAAAGCGAGCTGTAGTGTTGGTTAAATTACTTTCTTAATGTTATG
CACTTACTACAAATTACTGCTGCTGTTGTGGGCGATCTTTGCTTGCATGA
ATTAAGTTTTTTCTTTCAAA
back to top